Hpse011413.2
Basic Information
- Gene Symbol
- SMARCC2
- Assembly
- GCA_947369225.1
- Location
- OX376322.1:10467437-10485665[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-14 6.1e-11 42.6 0.1 3 44 204 245 202 247 0.95 2 2 0.1 88 3.7 0.0 28 44 259 275 258 277 0.88
Sequence Information
- Coding Sequence
- ATGCTGAGTGAAGAGGAGTTGGAAGACAACGTGACGGAACAGACGCACCACGTTGTAATGCCGTCGCACTCTTCATGGTTCGACTACAACGCCATCCACTCCATCGAGGAACGCGCGCTTCCGGAGTTCTTCAACGGCAAGAACAAAGCCAAGACGCCAGAGATTTACCTAGCTTACAGGAACTTTATGATCGACACATACCGGCTGAATCCGACGGAGTATCTGACAAGTACGGCGTGTCGACGCAACCTCGCCGGCGACGTCTGCGCCATCATGCGCATACACAGTTTCCTGGAACAGTGGGGGCTCGTCAACTACCAGTTGGAGGTGGAGTCGCGGCCGACTGCGATGGGTCCGCCGCCAACGTCGCACTTCCACGTGTTGTCCGACACGCTGGCCGGTCTGCAGCCGGTGTCGCGCCTAGCGGAAAATGCAGCAGTGCCCAAAATCGAGGCCAGTTTGCCCAATGAAGCGGATGCAGGCAATTCGGCAGTCGCAGCAGCTACAGCTGCCGCCGAAGCTACAGTCACCCCGATTAAAGCAGAGCTTCCACTGGGCGGATCACCGGGACTCAAGCTTGATCAGTACTATAGAGCCACACGCGGGTGCGAGTGGACGGAGAATGAGACGCTGCTGCTACTAGAGGCGTTGGAGCTGTACCGCGACGACTGGAACCGCGTGGCTGCGCACGTGGGCACCCGCACGCATCACGAGTGCATTCTACACTTCCTGCGCCTGCCCGTCGAAGACACCTATCTTCAGGATGCACCCTCAGCGCACGTGGGCACGCTCACGCATCACGAGTGCATCCTGCACTTCCTGCGCCTGCCCGTCGAAGACACCTATCTTCAGGATGCATCCTCGGGTGGCGTGCTGGGCCCGCTTGCATACCAGCCGATACCATTCAGCAAGACCGGCAACCCGGTAATGAGCACAGTGGCTTACCTCGCGTCCCTGGTTGACCCTCGGATCGTCTCCGAAGCCACCGAGGCTGCTATGGACGAGTTTGCTACTATCAAGAATGCGGTGGCCGACCCGATTATGGAAACCCATGTAAAGGCGGCTGAAACGCAAGCTGCCACTGGTATCGTGGGCATCGAGCCTCAGCTGTCACCACCAGGAGAGGGAAAGGAGGGCGGAACGGAGATAACGTCGACGGCATCAGCAGCCCTGGCTGCAGCGGTGTTGAAGGCCAAGCAACTCGCCGGCGTGGAGGAGCGTAAGATCAAGTCACTGGTGGCGTTGTTGGTTGAGACACAGATGAAGATACTCGACATGAAGCTGAGACACTTCGAACAGCTCGAGGATACTATACTTCGCGAGCGGGAAGGTCTTGAGTACCAACGGCAGCAACTGATCCAGGAGCGACAACTGTTCCTCCTCCAGCAACTGAGGGCTGCCGAGATACGTGCCAGATACAAAGCCCGCCAGAGGGTGCAAGCAGAGAGCGGTGCGGTCGGGGTCGCAGCAGCCGCCACGGCAAGGCAGCACCCATGCGAGGCAGCGCCAGAAGTTCCGCAGCCGCACACCTAG
- Protein Sequence
- MLSEEELEDNVTEQTHHVVMPSHSSWFDYNAIHSIEERALPEFFNGKNKAKTPEIYLAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRIHSFLEQWGLVNYQLEVESRPTAMGPPPTSHFHVLSDTLAGLQPVSRLAENAAVPKIEASLPNEADAGNSAVAAATAAAEATVTPIKAELPLGGSPGLKLDQYYRATRGCEWTENETLLLLEALELYRDDWNRVAAHVGTRTHHECILHFLRLPVEDTYLQDAPSAHVGTLTHHECILHFLRLPVEDTYLQDASSGGVLGPLAYQPIPFSKTGNPVMSTVAYLASLVDPRIVSEATEAAMDEFATIKNAVADPIMETHVKAAETQAATGIVGIEPQLSPPGEGKEGGTEITSTASAALAAAVLKAKQLAGVEERKIKSLVALLVETQMKILDMKLRHFEQLEDTILREREGLEYQRQQLIQERQLFLLQQLRAAEIRARYKARQRVQAESGAVGVAAAATARQHPCEAAPEVPQPHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -