Hpse000494.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376336.1:5467561-5476479[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.2e-08 3.2e-05 23.9 0.0 1 35 219 253 219 261 0.90
Sequence Information
- Coding Sequence
- ATGAGTGAAACAGAGACGAGTTTCGATAGATGCAGATGTTGTTTAGAAGACGGAGAATTAAGAGATTTGTGGGGCGAATATATCCGCAATGGCGAACGTACAAACTATGGCGAGATGATTGTAAATTGTTTCGTTCTTCCTTGGCAGCAACCGAGTGACTACATGGAGCAGATCTGTGAAGTGTGCATTGAGAAGCTCCAGGATGCGTTCAGTTTCAAGAAGAAGGTCCTCGCTTCGGAGCTGGTGCTGCAGCAGCAAATGTCGTACGAATCTGAAAACATTGAAAAAAAACCAACTGCAGCCCAGCTGAAAATTAAAGTCGAACCAAAAAGTGAAAACCCTGACGTCATTAAAGGGCATTACAGTGATGAAGCTTGTGAAGAGGAGAATGAGAACGTTACATATTATGTTGTTGAAAATAATGCAGACACAATGGCAGAGGACAGCCAAGACATGTCGATGGAGGATGGGGAATATTGTGAAGAGACTATGTCATCTGTGAATCAGGATGATGAATCTGCGGAATATTTGGAAGTTGAATTTTTGGACGACTGTGACAATGCTGCTAAACAAACTACAGAAGAAACATCTACAAAAAGAAAATGGCCAAAGAAGAAAAAAAAGAGTGAACAAATGTCAACGTACAAACAGTACACGAAGGAAGACTTGCAGAAAGCTATGGAAGCTGTAAAAAATAACCTCATGAGCCGTTCTGAAGCGGCTAGATTGTATAACGTGCCTGTTAAAACTCTTGGTAGTAAATTGAGGGTGGAAGCCACGAAGATTGAAAATCCTGAAATATCTGAAGAAGAGGAACAGAGACTTCAGAATCAGGAGAAACACAATAGATTTATTGAAGAAATCAAAACCATATTGACTTATACAAACAGCACTCCATACAGAAGCAAAGCTGGGCGCTATAACTGCGCTTACTGCTCTGTAAACGATTTCTTTGAAAATCCAGACGATCTCCGGACCCATACAAGAACCAAGCATGCAAGCGACAGGCTGAGAGCCGTTGAAGAATTTATGAAACCTTCTTGGCTCAACGAAATTATCAAACTTGACATAGAAAACCTGAACTGCGTCATTTGCTGCGCTCCCATAGAGTCATGGAATGACATGTTCAAGCATTTGAAAGACAATCATGATGTGGACTTAGATGAAGCGTATACTAGAGTAAtaccgtttaagctgacagagcaattgacgtgcgctttatgcagcgaaaaattcccaaattaccacaccctggattcacatatgaacgcccattacaacaactacatatgtggcgaatgtggagacacgttcctttcagagagccgtatgaagaaacacaccgagacccacagaatcggacggtttccctgcacgcactgtgataaagtgttcTCATTGGACAAGTACAGAAAGAAACACATAGACGGCGTTCACTGCAATGAAGCTAAAGTTAAGTGCCCGTACTGCGCTGAAAAGTTTCGCGGGGAATACGCCAGGCATTTGCATCAATTAGAAGTGCACCAAGAAAAAATCAAGACAATAAAGTGTGAGCTCTGCCCAAAGACATTCGACTGGAGACCGTACTATTTGAAGCATATGAGACTTAATCATAATAAGAAAGAGAAGAAACATAAGTGTACTCTGTGCAGTAAACAGTTTTCAATGCGTTATGAGTTAAAGAACCACGAGGAATGGCACAAAGGTGTGAAAAATGTTTGTGTGGTATGTGGTAAAAACTTTTGCACGAAACAGTATCTGCAGAAACATTACAAAATTCATATGGACGAGAATACTGATACGATTCTAATTTTATAG
- Protein Sequence
- MSETETSFDRCRCCLEDGELRDLWGEYIRNGERTNYGEMIVNCFVLPWQQPSDYMEQICEVCIEKLQDAFSFKKKVLASELVLQQQMSYESENIEKKPTAAQLKIKVEPKSENPDVIKGHYSDEACEEENENVTYYVVENNADTMAEDSQDMSMEDGEYCEETMSSVNQDDESAEYLEVEFLDDCDNAAKQTTEETSTKRKWPKKKKKSEQMSTYKQYTKEDLQKAMEAVKNNLMSRSEAARLYNVPVKTLGSKLRVEATKIENPEISEEEEQRLQNQEKHNRFIEEIKTILTYTNSTPYRSKAGRYNCAYCSVNDFFENPDDLRTHTRTKHASDRLRAVEEFMKPSWLNEIIKLDIENLNCVICCAPIESWNDMFKHLKDNHDVDLDEAYTRVIPFKLTEQLTCALCSEKFPNYHTLDSHMNAHYNNYICGECGDTFLSESRMKKHTETHRIGRFPCTHCDKVFSLDKYRKKHIDGVHCNEAKVKCPYCAEKFRGEYARHLHQLEVHQEKIKTIKCELCPKTFDWRPYYLKHMRLNHNKKEKKHKCTLCSKQFSMRYELKNHEEWHKGVKNVCVVCGKNFCTKQYLQKHYKIHMDENTDTILIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00807212;
- 90% Identity
- iTF_00807212;
- 80% Identity
- iTF_00807212;