Hpse018195.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376329.1:2322140-2327798[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-10 4.5e-08 33.1 0.0 1 43 17 59 17 61 0.90 2 2 8.8 3e+03 -1.6 0.1 13 23 138 149 136 150 0.72
Sequence Information
- Coding Sequence
- atgccgagaaagtataaaaggaaacaaaacgtagttagaggacagtggagtgaagaaaatttggtactggctattgaaaaagtgaaaaagggtgaaatgtcgaagaatgaggtgcaaagaacctacggaattcctattcgtactttatcaaggcGACTGAAGTCTGGCATTACTTCAAAATCTGGACTAGGACCACATGCATCACTCGGATTGGAGAACGAGAAACGACTGGCATCTTATATTAAACGCCTCGCTGCTTCTGGCTTTGCACTTGACAGAGATGCCATCCGTACTTTGGCCTATCAGTTTGCTGAGAAATTAGGTATTAAGCACAAATTTTCGAAAGAAAACGAAAAAGCGGGTTACCATTGGCTAGCATCTTTTTTGGAGAGAAATACAGATATTTCGGTTCGTCAAGCTGAAGGTCTGTCAGTCGCCAGAGCTCAAGGCATGAATAGGAATGAAGTGAATGCTTTTTTTAAGCTGCTTGAAGAAGAAATGGTAAAAAATGATTTGACTAATAAACCTGAAAACATTTTTAACGTTGATGAGAGTGGAATACAGTTGATAAATAAACCGGGAAAAGTCTTGGCAGCCAAAGGAGCTAAGGACGTTCATTTGATCACGCCACGTGAGAAGGGAGAGACTGTATCTTTGGTTGCTTGCTGTAACGCCGAAGGTCGGTATTTACCTCCAGTATTGGTAATGAAGGGTGTCAATAAAAAAGCAGAATTCTCAGATGGTCTTCCAAATGGATCTGAGGTCTTTATGAATAAAAAGTCATCATACATCAATACAGAACTTTTTGTGAGATGGTTTAAGGAACATTTCTTGCCTCGGAAACCAACGGAAGGTAAAACTATTTTAATACTGGATGGCCACTCCTCTCATTCTAACATAGAGCTGCTAGATCTCGCTAATGACAACGACGTTATAATAATATGTTTGCCTAGTCACACCACCCAGGCACTGCAACCGTTAGACCGAAGCTTCTTTAAACCCCTGAAGACATATTATGCACAAGAGGCTAATTCTTGGATGTTAAAAAATAAAGACAGGACGATTACGAGATTGCAGGTGGGCAACCTGATAGGACTAGCTTGGGGAAAAGCGGCCACTGTCGGCAACGCCTCCTCGGGTTTCAAAGCTTGCGGAATCTTTCCCTTGAACCCGAATGCTGTGCCTGACCATTTCTTCGCAATATCCGACATGATTGAAGCTGCACCCCCAACAGTTCCATCTACTTCGAGTCAATCCCCATCAAGAGCAACTGTTGCAACCCCACCAGTTCCATTTACGGCGACTCAAGCGTCATCAAGAGCATTTGTTTCACACCCACCAGTTCCATCTACTGTGACAAGAACCCCATCAAAAGCATCTACATCTGGACAATCAGTCACACTGGCCAACAAAGAAACACCGACAAAACTTCTTGAAGAAGCGAAACCGATTCCAAAGCTGCCAATTTCAAACGTAAAACGCAAGCAAGTTGCATGTGTATTGACTTCTCCTGAAAACCTGATCAAGAAAACTTCAAAAGTTTCTTTAATAAAAGGAGCAGCTAAACGACGCACATTGCAGCGTTTCTTCCGTTTGTTTTGTTGTTCTGCCGTGGATCCTCTCAACTCTTTGAGCATGTCTACTACTACAGCACACACATTATCGTTGACTTCCTTCACGTTGGCAGCTGTTACTTGA
- Protein Sequence
- MPRKYKRKQNVVRGQWSEENLVLAIEKVKKGEMSKNEVQRTYGIPIRTLSRRLKSGITSKSGLGPHASLGLENEKRLASYIKRLAASGFALDRDAIRTLAYQFAEKLGIKHKFSKENEKAGYHWLASFLERNTDISVRQAEGLSVARAQGMNRNEVNAFFKLLEEEMVKNDLTNKPENIFNVDESGIQLINKPGKVLAAKGAKDVHLITPREKGETVSLVACCNAEGRYLPPVLVMKGVNKKAEFSDGLPNGSEVFMNKKSSYINTELFVRWFKEHFLPRKPTEGKTILILDGHSSHSNIELLDLANDNDVIIICLPSHTTQALQPLDRSFFKPLKTYYAQEANSWMLKNKDRTITRLQVGNLIGLAWGKAATVGNASSGFKACGIFPLNPNAVPDHFFAISDMIEAAPPTVPSTSSQSPSRATVATPPVPFTATQASSRAFVSHPPVPSTVTRTPSKASTSGQSVTLANKETPTKLLEEAKPIPKLPISNVKRKQVACVLTSPENLIKKTSKVSLIKGAAKRRTLQRFFRLFCCSAVDPLNSLSMSTTTAHTLSLTSFTLAAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -