Hpse010292.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376321.1:3319637-3320086[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-11 2.1e-08 34.1 0.0 4 36 21 54 18 62 0.90 2 2 7.8 2.7e+03 -1.4 0.0 35 44 122 131 120 131 0.85
Sequence Information
- Coding Sequence
- ATGTTACAATTTTCAGCAATATCAAACTGTGAAGATTATTACAAATGTTGTAAGAAAAATCGTATGAAATGTGCTATCGACGCGGTGGTATCCTCCGAATTGAGCGTGCGGCGCGCTGCAAAGCTTTACAACGTAGCGAGATCAACATTAAACGATAAAGTGAACATCATAAAGAAGGGCAAGGAAGTATCCATTGCCTCAGTAGCTGCTGGAGGTCCCACTAAAGTAGTCTATGAACAATTTGAACAGCTACTTCTGCGGCACGCGCGAAAACAAGCGGTCAAAAATAAACCCTTCAGAAAGGATCAATTTTTAAAATTCGCTTGTGATGCGGGAAAACGATTAAAACTGAATCGGTTCAATAAATGCAAGAAAGGAAAGCCCAGTTATAAATATTTGTATACTTTCATCAGGAAACATCCTGAACTCGCTGATTTGTTTGATGATTGA
- Protein Sequence
- MLQFSAISNCEDYYKCCKKNRMKCAIDAVVSSELSVRRAAKLYNVARSTLNDKVNIIKKGKEVSIASVAAGGPTKVVYEQFEQLLLRHARKQAVKNKPFRKDQFLKFACDAGKRLKLNRFNKCKKGKPSYKYLYTFIRKHPELADLFDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -