Hpse019873.1
Basic Information
- Gene Symbol
- clz9
- Assembly
- GCA_947369225.1
- Location
- OX376333.1:3314499-3317033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-13 6.8e-11 42.1 0.2 3 44 27 68 25 69 0.94
Sequence Information
- Coding Sequence
- ATGGTTCGAATTTATAAAAGATCATATCGTCACAGTCGCAATGGCAAAAATTTTCAACCATACACCTCATACAGACAAGAAAGCTTGGAAAAAGCTATTATGGAAATTCGAACTGGTTCTACCACAGTAAGTGAGGCTGCCAAAAAGTATAATATTCCGAAAAGCACGTTATCAAGAAAGTATAGAGGTAAAAATTCATCTCAAGAGAAAGCTGGTCATCCAACACTCTTCACACCTACAGAGGAAAAAACGTTTATCGCTTACATAAAAACTCTAGGTGATTGGGGATTTCCTTTTGATACCTTGGACCTTCGAGTGCTAGCCCAGAAATACCTTAACAAAATTGGTAAAACTGTATACACTTTGAAAGATAATATGCCGGGTTGTGATTGGGCCACGAATTTTTTGCTGCGAAATAAAGATGAAATATCTAACCGCTTTGCAGCGAATATCTCAACAGACAGAGCAAAATTATCAGAAGAAGTGTTAGATGCGTTTTTCGAAAATTACATTCAGACGATTGACGGGGTTAGTCCTGACTGCATAATAaattatgatgagacgaaccttagtgacgatcccggaaacaagaaatacatatataaaaggggaaccaagtatccagaacgtgtgatcaatagttcaaaatctgcaattagtctgatgttttccggaggtgcagatggaacaatgatgcctgtttacgtagtttataaggctgaacacctgtgggactcatggattctagggggacctgaaaaaaccagctataaccgatcgcgaagcggatggttcgatggagcttgctttgaagattggtttaataccattattgtgccatacgcaaagaagaaagctggtcgaaaagtaataatcggagacaacttgtcttcccatttttcggaggcaatattgaagatgtgtgaaaaactaaacatatcgttcgtttgtttgcctcccaagtcaacccatattcttcaGCCACTAGACGTGGCATTTTATGGCCCTCTTAAATATTACTGGAGGCAGATTCTCACAGAATGGAAAAAGCTGGAAGGACGTAAACACAAGACTTTGGTAAAGATTGCGTTTCCACGTCTTTTGGGGAAATTAGTAAACAAGCTAACACAGCATGATGTTGGCGCCAAAAATATCAAAGCCGGCTTTGAGAAATGCGGTCTTTTCCCCGTTAATCCCGAGCGACCTAAGTCAAGGCTCCCTCAAAATATTCATGAATTTGAGGAAGAAGTGAATACTGTGACATCGGAAGTTGTAGTTGCAATGTTACAAGAGATGCGGGGAGTTACGGCTCCTACAGATGCCACTAAAAGAAAAAAAAGAATTGAGGTTGCTCCAGGGAAAAGTATAACGGCTGATGACTTTTTGCAAAAAAAACAGGCAGCTTTGACAAAAGGACAAAAAAAGAGTAATCTATCTAAAGGGAAAGTCTCAGATGCGTTGGCTGAAAATAGTGATTCCGACATTACTTTTGTGATGAGTGACATTGAAGAAGACTTGGACAGGGCATCACTTTCATCTGATGTCATTGACTTAACTGAAATACCACAACCAGGCCTATCCACAACAAGAATTGAAAAGGAAAAGAAGACAATAAACAGATGCAGAGTAAAAGGAAAGGGAAAGACTAGTACTGCCAAGAGTTTAAACAAAACCGAATATTACAAGCCAGTAATTGACAAAGATACGGATGCGTTACGTGCAGTATGGAAGGCTTCAATCAAAAGTGCTTTGGAAAAAAAGAAAAATCTACGAAGAAAGGACTCTACAACCAGCGTATCAGATATAATGAGTGAACATAGTGATTCGGACATTATGGACGTAATAAGTGACATGAGTGATGACTTAGACAAAGCCCCTGAACCCATTGTTGAGTCATCTATTCAAACCAAAGGCAAGGGAAAGGGCAAAAAGACTGTCCAAAAACAAATCCAGGATTCTGAAATAATTCCAATTATTCAGATTACTGCCACTAATGACGACCCTGTCAAGATTTCATCTTCAGCAACTACGGTTGAACCCATGGTAATCATTACAGAAAATGAGAATAAGGAAAATTTAAGCAATAATGTTGTAAGTTGTGGACTGAACGCGCATAATAATGCCAGCGATAAAGATTCAAGTACAATAATTGACGTTAGGCCCGCTAATGACGACACGGACATGGTCTCGGTTCCAGGAACTATTGTACCAATGAAAATCGCTAAATTATTTGTCCAAGGTGATGAACAGTTGACTTATGACATTAATGATAAAGTAATGGTCAGATATTACCAAAAACATGGCTGGAAGTATTACATAGGTTTTATAGAAAATATAGAACCAGATAAGTACACTATTAACTTTCTCAGCACTGTTAAAAAACCCGAATTAAAGTTCACTGCGAGAAACAAGAGAATTGATCGAGACGTTGTGCCGGCTATATCAATTGTGAAAAAAATCGATATTGTTGAAAATGATAAACGGCCATTAGAATTTAAGCTGTCCAATGATGCTGATGAGGTGTATTTTAAATGA
- Protein Sequence
- MVRIYKRSYRHSRNGKNFQPYTSYRQESLEKAIMEIRTGSTTVSEAAKKYNIPKSTLSRKYRGKNSSQEKAGHPTLFTPTEEKTFIAYIKTLGDWGFPFDTLDLRVLAQKYLNKIGKTVYTLKDNMPGCDWATNFLLRNKDEISNRFAANISTDRAKLSEEVLDAFFENYIQTIDGVSPDCIINYDETNLSDDPGNKKYIYKRGTKYPERVINSSKSAISLMFSGGADGTMMPVYVVYKAEHLWDSWILGGPEKTSYNRSRSGWFDGACFEDWFNTIIVPYAKKKAGRKVIIGDNLSSHFSEAILKMCEKLNISFVCLPPKSTHILQPLDVAFYGPLKYYWRQILTEWKKLEGRKHKTLVKIAFPRLLGKLVNKLTQHDVGAKNIKAGFEKCGLFPVNPERPKSRLPQNIHEFEEEVNTVTSEVVVAMLQEMRGVTAPTDATKRKKRIEVAPGKSITADDFLQKKQAALTKGQKKSNLSKGKVSDALAENSDSDITFVMSDIEEDLDRASLSSDVIDLTEIPQPGLSTTRIEKEKKTINRCRVKGKGKTSTAKSLNKTEYYKPVIDKDTDALRAVWKASIKSALEKKKNLRRKDSTTSVSDIMSEHSDSDIMDVISDMSDDLDKAPEPIVESSIQTKGKGKGKKTVQKQIQDSEIIPIIQITATNDDPVKISSSATTVEPMVIITENENKENLSNNVVSCGLNAHNNASDKDSSTIIDVRPANDDTDMVSVPGTIVPMKIAKLFVQGDEQLTYDINDKVMVRYYQKHGWKYYIGFIENIEPDKYTINFLSTVKKPELKFTARNKRIDRDVVPAISIVKKIDIVENDKRPLEFKLSNDADEVYFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -