Hpse009741.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376335.1:3666507-3669289[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0012 0.41 10.8 0.0 17 37 32 53 16 59 0.78 2 3 1.5e-05 0.0051 16.9 0.0 3 37 270 304 268 309 0.93 3 3 1.8e-05 0.0061 16.6 0.0 3 37 522 556 520 561 0.93
Sequence Information
- Coding Sequence
- ATGGGTCGTAATGTAGCTGGGACAGCAAGGAAGAAGGGCAAGATAACAGCCGGACAAATGCAACGCGCGATTGATCTCCACTCAATTAGTCATTACAGCATTAGAAGTGCAGCCAAAGAATGCAACATTCCATTTCCGACTCTCCGTCGGTATGTGTACAAGTTTAAACGGGGTGAGCTGTCCCGATTGGAGCCAAACTATTCGGTAAACAAGATTTTTACCGAACATCAGGAACATACCCTTAACCAATATATCATAGAATACGTCGACAAATTCCATGGACTTACAACAAAAGAATGTTGCCAGATTGCGTATCAAATGGCAAAAATAAATAACTTGAAAATGCCAAAAACGTGGGAGGATAATGAAGTAGCCGGAAAAGATTGGTTTCGTGGGTTTAAAAGAAGGTTCCCAGACTTGAAAGTTAGAAATCCAAAATGTTGCTTGGATAGAACAACTGTCTTTGATATCACTAACGTGGGAAACATCTTCAAAAATTTGAAAGAAATCGCAGACGAGGCATCTGCAACTGCAGTCCAACCACAGCAAAAAGTATTAGAACTAATTGACAGACATTCTGCAGACGGTAATGATCACGATACAGTCGGGGAAGTTTGCTGCAAGTCTCCAATGGAACCTGTTAGTGTTGAGATTAAGCAGGACATAGACAGTGAAACAGACGCTGGAGTTTTAAACAACTCTCCTGTTGTGGACGGTATTCAAGAAAACATAACTTATTCTTCTAATGCAGCTACAGTGACTCCTAGGAGTCCTATGCCAACAAGGAAAAAGGGCAAAATAACATCCGGACAAATGAAACGCGCGATTGATCTCCACTCAAATGGTCATTATAGCATTAGAAGTGCAGCCAAAGAATGCAACATTCCATTTCCGACCCTCCGTCGGTATGTGGACAAGTTTAAACGGGGTGAGCTGTCCCGATTGGAGCCAAATTATTCAGTAAACAAGATTTTTACCGAACAGCAGGAATTGACCCTTAACCAAAATATCATAGAATACGCCGACAAATTCCAAGGACTTACAACAAAAGAATGTTGCCAGATTGCGTATCAAATGGCAAAAATAAATAATTTGAAAATGCCAAAAACGTGGGAGCGTAATGAAATGGCCGGAAAAAATTGGTTTCGTGGGCTTAAAAGAAGGTTCCCGGACTTGAAAGTTAGGAAACCAGAAAGTTGCTTGGATAGAACGACTGTCTTTGATATCACTAACGTGGAAAACATCTTCAAAAATTTGAAAGAAATCGCAGACGAGGCATCTGCAACTGCAGTCCAACCGCAGCAAAAAGTATTAGAACTAATTGACAGACATTCTGCAGACGGTAATGATCACGATACAGTCGGGGAAGTTTGCTGCAAGTCTCCAATGGAACCTGTTAGTGTTGAGATTAAGCAGGACATAGACAGTGAAACAGACGCTGGAGTCTTAAACAACTCTCCTGTTGCGGACGGTATTCAAGAAAACATAACTTATTCTTCTAATGCAGCTACAGTGACTCCTAGGAGTCCTATGCCAACAAGGAAAAAGGGCAAAATAACATCCGGACAAATGAAACGAGCGATTGATCTCCACTCAAATGGTCATTATAGCATTAGGAACGCAGCCAAAAAATGCCAAATTCCTTTTACGACTCTCCGTCGGTATGTGGACAAGTTTAAACGGGGTGAACTGTCCCGATTGGAGCCAAATTATTCAGTAAACAAGATTTTTACCGAACAGCAGGAACATACCCTTACCCAATATATCATAGAATACGCCGACAAATTCCAAGGACTTACAACAAAAGAATGTTGCCAGATTGCGTATCAAATGGCAAAAATAAATAACTTGAAAATGCCAACAACGTGGGAGGACAATGAAATGGCCGGAAAATATTGGTTTCGTGGCTTTAAAAGAAGGTTCCCGGACTTGAGAGTTAAAAAGCCAGAAGCGTGTAGCTTGCATAGAGCAGCTATCTTTGATATAACCGACGTGGAAAACCTCTTTAAAACTTTAAAAGAAGTTTCACATGAAACATCTATAAGTCCGGTCCAACGACAGCAAGAACTATTAGCACCGTTTGACTGTCATTCTGCAAATGACGATGATGATACTGATGATGAAGGTTCCAGCAAGTCTCCATCGGTATCTATCATGATGGAGCAAGACAGTGACACGGACGTGGAAGGAGTCTTCTACTACTCTCCTACTTTCTCGAATGGTATTCATGACGACGCAGAGTTGAACAGCGACGATGACCTCTCTGACGACACCTCTATGTACACCGAGGTACCGCCCTCGAAGGTCAAGGGAAAGGCTGCGACAAAGGCTACACCAGTCACAACCGCGACCAGTAGCGGTCTGCACGAGGGTTTCCAGTGTAACTGGTGTTCTGGGGACATCGTCGGGTGA
- Protein Sequence
- MGRNVAGTARKKGKITAGQMQRAIDLHSISHYSIRSAAKECNIPFPTLRRYVYKFKRGELSRLEPNYSVNKIFTEHQEHTLNQYIIEYVDKFHGLTTKECCQIAYQMAKINNLKMPKTWEDNEVAGKDWFRGFKRRFPDLKVRNPKCCLDRTTVFDITNVGNIFKNLKEIADEASATAVQPQQKVLELIDRHSADGNDHDTVGEVCCKSPMEPVSVEIKQDIDSETDAGVLNNSPVVDGIQENITYSSNAATVTPRSPMPTRKKGKITSGQMKRAIDLHSNGHYSIRSAAKECNIPFPTLRRYVDKFKRGELSRLEPNYSVNKIFTEQQELTLNQNIIEYADKFQGLTTKECCQIAYQMAKINNLKMPKTWERNEMAGKNWFRGLKRRFPDLKVRKPESCLDRTTVFDITNVENIFKNLKEIADEASATAVQPQQKVLELIDRHSADGNDHDTVGEVCCKSPMEPVSVEIKQDIDSETDAGVLNNSPVADGIQENITYSSNAATVTPRSPMPTRKKGKITSGQMKRAIDLHSNGHYSIRNAAKKCQIPFTTLRRYVDKFKRGELSRLEPNYSVNKIFTEQQEHTLTQYIIEYADKFQGLTTKECCQIAYQMAKINNLKMPTTWEDNEMAGKYWFRGFKRRFPDLRVKKPEACSLHRAAIFDITDVENLFKTLKEVSHETSISPVQRQQELLAPFDCHSANDDDDTDDEGSSKSPSVSIMMEQDSDTDVEGVFYYSPTFSNGIHDDAELNSDDDLSDDTSMYTEVPPSKVKGKAATKATPVTTATSSGLHEGFQCNWCSGDIVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -