Hpse018481.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376329.1:7363446-7380862[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-09 4.1e-07 30.0 0.0 2 41 16 56 15 60 0.91 2 2 5.3e-06 0.0018 18.3 0.0 8 34 334 359 330 364 0.93
Sequence Information
- Coding Sequence
- ATGGTTCGGAATTACGTTCGTCGTACACAGCGACAGTCATGGAACGAAACAGCTATGAAGAGCGCCGTTGAAGCTGTTACTAAGAATGAGATGGGTTATAAAACAGCATCCAAAAATTATAATGTGCCTACCAGCACTCTCAGAGATAGGGTAAAAAAAGTTAGAGATGGAGTTAAGGAAATTGAAAACAGCGGAGAGAAAGGATTAGGCAACTTCAAAACCGTATTCACAAAAGAACAAGAACAAAATTCTGCTAAGCCTACGCACCAAATGCATTCACATCCATCGTTACCCAATTGTTCGTTCAAGTTCACATCACCCAAAGATCTTATTAAAATTCCTGGTGGTGGAAGGCAACCCAATTCTGGACAAACGAAAAGAAAGGGAAAAACCGCTGTCCTCACAAGTTCACCTTACAAAACAGAGCTGGAGACCATTGCTAGAGAGAAAGAAGAAAAAGAATTGAAAAAAGCTAGAGACAAAGGAGAAAAAGAATTGAAAAAAGCTAAAAAGAAAGAAGAAAAGGAATTGAAAATAAAGAGAAAGTCCCAAGGTACTGCTACTAAGAAAGTGAGTGAAAGTAAGAGAAAGAAGACCACGATTGCAACATCAACCTCCAATGAAATTCAAATAAAAGAAAGGACGAAAATAAACAAATCGAAGGCTAAGAAAATAAAAAATGTGCAAAGCGACAGCTCTAACGAAGAAGATGATCATATCAGCATATATTCCGAAGAAGAACCGATGTTTGAGGAAGAAGAGGAGATAACTGTGGTTGTAGACCCCAATAACTTTTGCCCTCTGGATAGTTCTCCAAAGGAAGGGAATTTCATGTTAATCGAGTTTGAGGTGAAAGGAAAAAAGTTTTATTACATAGGAAAAGTTATTGGGGAAAAAGGCAATGAGACCGAGGGCCTGGGAATAATGTCTACTTCAAGATCGAAAGCCGACGGAGTAAAGAAAAAATTATTTCAATACTCACCGCACAAAGTAGGCCAGGCGTTAGAAGCAGTAAGAAATGGAATGAAAGTCTCTACTGCGAGCAAGAACTTCAAAGTTCCTCGAACCACCTTACGACATAAACTTTCTGTTGCATCCAAAAAGGTTGAAGATCCTTGCATATCTCCCTCCATCATTGACAACTACAATCAAGATGACACCTGCAATGAACAGGACGCCACGGGACAAACAAATACACCAAACCAGGACAAAAGGGTTGATGATCCTTACGTATCTCCCTCCATCATGGACAACTGCAATCAAGATGACACCTGCAATGAAAAGGACACCATCAGACAAACAAATACGCCAAACCAGGACAATTTCGTCAAAAATCCTTGCATATCTACATCTCATCTTGTTACCTGTTATGAAAAGGACACCACTACCAGCCAAAACGACCTTGATCAGAATGAAATTGATAGACCATCGAATGTGTCAGCTATTACTCTGCGTGGCAGAATTAACGATAATGAGTCAAATGCTAGGAAACGAGTAAAAACATCACAGATTGACAATAATGAGGCAAATGCCAGGAAACGGAAAAAAAATTCTAGAGTAGGCTCTGATACATCTGAAGAAGAAGAAAATAACGAAGAAATTGAGACACTCACGTCTGACAATGACTGTGAAAACTGGGCTCCTGATGCTGCTCCGACGGCTTTTGAAGAACTAAATAGAAACCCTGCGGAAGAAGACTACGTAATCGTGGAATTCAAAAAACAAAACAATACAATATATTACATTGGAAAAATACAATATATTACACTGGAAAAATACTTACAGAAGAAGACGAAGAAAACAACTTTGAAAAACAAATTCACGGACGATGACTTTGAATGTTCGGAAGTGACAAATCGGGTTTATCCTTCGCATGTTCCCTTGATAGTTGCATCTGAGAATTTAACTCCTGGTGGTGTAATAGCTGAAGATGTGGAGACTGATCAACCTCAACAGGTGTTATCACAGTTTGGTGCCTCTATACCACGCAATATCAAAGACAATGTCACTGAAGCTGAAAAGCTGGAATTAAATGAACCCACAACAGCAGTTGCTCATGACTCTACTGACAAAGCTCAAATTGTTGCTCAAGCACCTGCAATTGACAGTGATGCTACTGACGCTGAAGATATAGAAGTAGATCAACCTGTAATAGCTTCAATTGAGGCTATTGACAAAGGTAATAAACCTACCACAACCCTTACATCTCAACTTCCCCTTGAACTTAATCATGTAACCAATGAATCTGCAAAAACACCCACTAAGAATACTAATAACGCTCACGTGCAAACTCCTACACGTTCACCATCTGTAATCGAAAGTGCCGcgaatattgatcaatcatcagcagcctattctagtccactgctggacataggcctctcccagggcgcgccattgagcccgatcttcggctcttctcatccagtcgctgccagccaccttgcgcagatcgtcgctccatctagcaggggggcgAATATTGATAATTTGGAGAAAATAAACAGGAACACTGAAAATATAAGGGGAAAAGTAGCAATTACTCCTGAAGCAATAAGACCGTTTCCTAAAGCGACTCCTCGTACTGGAAGCAAAGGCAGAAAGAAAGGCTCATCACGAATCTTAACTGATACTCCCGAAAAATGCGCAGTAGAAGCTGCTTATCTAGGTCGGATTAAACGCAAGCTTTCAATTCTGCCTTTATCAAAACGAGGAAAATGTATGCCTAAGAACAATACGTATAAAAAGAAGAAACCGTTGCCAAAATATCAGTCAAACTCAGAATCTGATGGAAATATATCTTTTCATGATAATTCTGATATGGATTTAACAGGTGGTCAAAGTAATTCGGAGTCTGATAATCTAGTTGATGAAAGGGAATCAATTCAATCCTTGACAAATAATTTAAATGAAAATGACTATGTATTGATGGAATCAAATGAGAGGGATTCTCAAGATACACCACCTGGGTGTGAAGCAACTGAAAAAAACACCGATGTGGCTATGCAAGCAGCACGGAATGTGACTGGAGAGTCTTACGCAATGCAGCAACTTAGGATGTTAAATTTTGATGATGAAAGCGATTTTGTTTCACCTAGACCTTCTCATGAGATCGTAAATACATATCTAACGCGTGAACTAGCTCAGGCTTTAGCAATCGATTCGGGAAGTGAACATGACGAAGAAGATGATCTTAATGAAAATGATTTACGCAGGATTTTGGAAACGAGTGAAAATGAAGAAACAGAAGAAAGAGAGGAAGAAGAAGTTATGCTAAATTATGATTTCTCGTGGTCTCAAAATTTCGAAGAatttactgCGTTACCCCTTTTGCCAAATGAACTGATCCAAGAGGGCTGGGATTACATTGAAGAGGAAATTGAAATGTTTAATGACGTGAAGTTGAGACGGTTCATCACGTATATGAAGAAAAATTGGATCAATAAAAATACAAATGAATGGTGTGTCTATAATGACCGCCACAGAACAAATAATATCTGCGAATCTTGGAATTCGACAATTAATAAAAGAATCAACATCAATTACGTGACACTGTTCAAATTATTGGCTGAGATATCTGAAGAAATCGAATCATTTGATGACTCTGCTGTCAAGCGACGCAAGATATATCAGGAGAAGGATAACCTAATCTTGACTACACAAATGAAGTTACTGCATAATGTCATTGGTTTGCTCTTGGAAAAGGCCGCATTAGAAACGGTTTCAAAGCGAAACCTTCGTCGCCGATTAGTACGTGAGGTACACGCGACCATCGCGGAGAGTACCCCGGAAAGCAACATAACTTCCCGAAATGATGAAGAAATAGCAGGGCCTTCCTGTAGTATCCCAAACAGGACGATCCGAGAAATTTCGACAAATGATCGGGGTTCTCCAAGCCTACTCATTCCGGGTGGTGTTATTCCAAGTGAAGATGATGATACTGATGCTGAGGAGGCTACTGGTATTACTGAAATGGAAATGCGGACACCGATTTTTACTCCAGAGAAGAGAATCATCGATCGCGTAACATCTCTTACAGCGTCGAAATGGTAG
- Protein Sequence
- MVRNYVRRTQRQSWNETAMKSAVEAVTKNEMGYKTASKNYNVPTSTLRDRVKKVRDGVKEIENSGEKGLGNFKTVFTKEQEQNSAKPTHQMHSHPSLPNCSFKFTSPKDLIKIPGGGRQPNSGQTKRKGKTAVLTSSPYKTELETIAREKEEKELKKARDKGEKELKKAKKKEEKELKIKRKSQGTATKKVSESKRKKTTIATSTSNEIQIKERTKINKSKAKKIKNVQSDSSNEEDDHISIYSEEEPMFEEEEEITVVVDPNNFCPLDSSPKEGNFMLIEFEVKGKKFYYIGKVIGEKGNETEGLGIMSTSRSKADGVKKKLFQYSPHKVGQALEAVRNGMKVSTASKNFKVPRTTLRHKLSVASKKVEDPCISPSIIDNYNQDDTCNEQDATGQTNTPNQDKRVDDPYVSPSIMDNCNQDDTCNEKDTIRQTNTPNQDNFVKNPCISTSHLVTCYEKDTTTSQNDLDQNEIDRPSNVSAITLRGRINDNESNARKRVKTSQIDNNEANARKRKKNSRVGSDTSEEEENNEEIETLTSDNDCENWAPDAAPTAFEELNRNPAEEDYVIVEFKKQNNTIYYIGKIQYITLEKYLQKKTKKTTLKNKFTDDDFECSEVTNRVYPSHVPLIVASENLTPGGVIAEDVETDQPQQVLSQFGASIPRNIKDNVTEAEKLELNEPTTAVAHDSTDKAQIVAQAPAIDSDATDAEDIEVDQPVIASIEAIDKGNKPTTTLTSQLPLELNHVTNESAKTPTKNTNNAHVQTPTRSPSVIESAANIDQSSAAYSSPLLDIGLSQGAPLSPIFGSSHPVAASHLAQIVAPSSRGANIDNLEKINRNTENIRGKVAITPEAIRPFPKATPRTGSKGRKKGSSRILTDTPEKCAVEAAYLGRIKRKLSILPLSKRGKCMPKNNTYKKKKPLPKYQSNSESDGNISFHDNSDMDLTGGQSNSESDNLVDERESIQSLTNNLNENDYVLMESNERDSQDTPPGCEATEKNTDVAMQAARNVTGESYAMQQLRMLNFDDESDFVSPRPSHEIVNTYLTRELAQALAIDSGSEHDEEDDLNENDLRRILETSENEETEEREEEEVMLNYDFSWSQNFEEFTALPLLPNELIQEGWDYIEEEIEMFNDVKLRRFITYMKKNWINKNTNEWCVYNDRHRTNNICESWNSTINKRININYVTLFKLLAEISEEIESFDDSAVKRRKIYQEKDNLILTTQMKLLHNVIGLLLEKAALETVSKRNLRRRLVREVHATIAESTPESNITSRNDEEIAGPSCSIPNRTIREISTNDRGSPSLLIPGGVIPSEDDDTDAEEATGITEMEMRTPIFTPEKRIIDRVTSLTASKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -