Hpse001161.1
Basic Information
- Gene Symbol
- mbr-1
- Assembly
- GCA_947369225.1
- Location
- OX376334.1:8279805-8301771[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-14 2.1e-11 43.7 0.0 1 38 152 190 152 193 0.95 2 2 2.8e-18 9.6e-16 57.6 0.0 1 43 359 402 359 404 0.95
Sequence Information
- Coding Sequence
- ATGGAATGCATAAAGCCCCCTAACAGTCCAGCATCGGAATCGGACAGCAGTTCGGTGTCGGAAGCAAAGAGCCCGGCTGGGGCGCCGCCGCTACTGCAGCACCTGTTGCAGCTGCAACTTCAGGCGCAGAGTCCGCAGACCATCGCGCAGTTCCAGCAGATGATCGCGACGCTTGCAGCTTTGAACACGGGGCTGGTCCCTCCAGCGCTATCGCAGGCGTGGTTTATGCAAAGGCTGGTGCAACGGCAACACGCTGACAGGATACCAGAAGTGTGCGAGAAGGCGGCGGCCCCGAGCTCGTCTCCGACCCTGGCGGAACAGCCTCTGGACCTCAGCGCCAAGTCTACCTCCAGCACCAGCGGAACGCCGCCGCCAGACAAGAACTTCGACAACTCTAGACTAAAACGCGCAGTCATAGACGGTGCGGGCCACAGCGCGACCCGACGGACGTACACAGACGACGAGCTCCAATCGGCTCTCCGGGACATCCAGTCCGGTCGTCTGGGCACGCGTCGCGCCGCCGTTGTCTACGGCATCCCCCGCTCCACCCTCCGGAACAAGGTCAACAAGTTCGGCCTCATCTCCGAGCAGCACGACTCGGAACCTGACAGCGACCCCGAACGGACCGACTCTCCACAATCCGTCATACTAAAGATACCGACATTCCCCCCTCCTGATGATAAAAGTTCGTCACCAGCTACCCCAGTCACTCCTGTCACACCAATAACCCCTTTAATCCCTCCCCAACCAACTCTAAATCCTCCCTCGCAACTCCTCCTCCCACCATCAGTGTATGCCGACGCACCGTCAACTCAACACCTTTTCACTTCCCTCAGCGATGTCATAGCGAAGAGTATCAGCCAGAAATTCACCCAGTCTCTAGACAGGCCCCCGCAACACGACCTGCCTTTCATGAGAACACATGACAGACACGTTTCGGTTATAAAAACGCCTCCAGATAATCAGAGGAACTATCCGATGCCCAGTAATTCTCGAGCTACGCCCAACAATAATGGTCAGCCAGCAACTGGTGGAAAAGGAACTAGACCCAAAAGAGGGAAGTATAGGAACTACGATCGGGATAGTCTGGTCGAAGCTGTTAAGGCAGTCCAAAGAGGAGAAATGTCAGTGCATAGGGCTGGATCGTATTACGGAGTACCTCATTCGACTCTTGAGTACAAAGTGAAGGAGCGGCATTTGATGAGGCCCAGGAAGCGGGAGCCGAAACCTCCTCAAGAACAGAAGCCTCAGCCTCCAAAACCGCCTCAACCAAAGCCGCCGACGAAGCCGTTTTCAAACGGTTTGAACGGGCCTGACAATCCAGGCTATCCGCCGGGCTATCCCTTCTGGCCCGGCGCTGGGTTCGCACCGCCTCCAGCTCCGGATCTCTACGCTTCGCATATGATGCGTAGACTACGAGAGGAGGTGCCTCCTCCAGCCAACGGGTCGTTCCTCGAAGGGATAATCAGGTCGAGTTTAGAAAGACCAGGGGCAGCGTTATTACAGAGATTAACGGCTGAGCCGCGGCCGCCGATGGCGCCGACCGAGGCGCCGAGTCTGCTGCGAAGGTTGGCGGGGGAGCCGGACGAGCCGCCACCGGTCAGACGCCCGAGGATCGACAGCTCCGACCGCCAGCTAGCCGCTGACTTAAGAGACGTGGTCCAGCGACTTCGAGCGGACAAGATGCGGCCTCGGAACGGGACCCCGAGCCCTCCAGGACATAATGCCGCGTTGTCCCCCCCTCCGCCGCCGTCAGCGCCCCCCGACCGCGCCTAG
- Protein Sequence
- MECIKPPNSPASESDSSSVSEAKSPAGAPPLLQHLLQLQLQAQSPQTIAQFQQMIATLAALNTGLVPPALSQAWFMQRLVQRQHADRIPEVCEKAAAPSSSPTLAEQPLDLSAKSTSSTSGTPPPDKNFDNSRLKRAVIDGAGHSATRRTYTDDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLISEQHDSEPDSDPERTDSPQSVILKIPTFPPPDDKSSSPATPVTPVTPITPLIPPQPTLNPPSQLLLPPSVYADAPSTQHLFTSLSDVIAKSISQKFTQSLDRPPQHDLPFMRTHDRHVSVIKTPPDNQRNYPMPSNSRATPNNNGQPATGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQEQKPQPPKPPQPKPPTKPFSNGLNGPDNPGYPPGYPFWPGAGFAPPPAPDLYASHMMRRLREEVPPPANGSFLEGIIRSSLERPGAALLQRLTAEPRPPMAPTEAPSLLRRLAGEPDEPPPVRRPRIDSSDRQLAADLRDVVQRLRADKMRPRNGTPSPPGHNAALSPPPPPSAPPDRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00027680;
- 90% Identity
- iTF_01401200;
- 80% Identity
- -