Hpse022480.2
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376323.1:13855908-13862458[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-10 6.4e-08 32.6 0.0 4 39 180 216 177 220 0.89 2 4 2.9e-10 1e-07 32.0 0.3 4 39 234 269 231 272 0.92 3 4 3.8e-13 1.3e-10 41.2 0.0 4 45 289 331 286 331 0.96 4 4 1.4e-17 4.9e-15 55.3 0.0 1 42 338 380 338 382 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGATTGTTTCAAGTAAAATGCGAACCGTCATCGGAGGAAGAGGACAGTAATTCTCAATTTACTTACAGCTACACAAATAACAAGCTGATTACGCCTGAACTCCGTCCAGTAAAATTAGAACTTGACTCTCAGCGTGACCACCATGTTCCCGCCCATCTTCTACAACATTTACAGGGCGCCAGCAGCCTGGAGGAGCTGGCGCCGCCCGCGCCGGCGGGCCCGGCCGCCACGCCGGTGTGCGTTAAGCAGGAGCCGACTGAGCCCGCGGGCGCCGCCACGCTCGAAACGCTAGAGTCCACGCCGCACGCTAACACCTCGGGCTCGATGCTATTCGATCGTCACCTGTCCCTATCATCGTTGAGTGCCTGCGATTCGCCTGACTGCTCGGACTTCATGCCTCTGGTTACCGTCAAAGATGAGCCGCTGTCTGAAGGAGAGCAACACACGCAGAGCGGCGACGATACGAGCGACTCGTCGACGCAGCCCGAGCACGCGCGCGGCAGCCCCAAGAGTTGGACCCAGAAGGACATGGACAACGCGCTCGAGGCGCTGCGGAAACACAACATGAGCCTCACCAAGGCATCGGCGACATACGGCATCCCATCAACAACGCTGTGGCAACGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGGCGCCAAGTCGTGGGGCGAGCGCGAGCTGCGCGCCGCCTTGTTAGCTCTGCGTCAGGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCGTACGGTATACCAAGCAGCACGTTGTACAAGATAGCGCGGCGCGAGGGCATCCGGTTGGCGGCGCCGTTCAACGCCGCACCCACCGCCTGGCGCCGAGTTGATCTAGAGCGGGCGCTCGCCTCCATCAGGTGCGGCGCCAGCTCCGTGCAGCGGGCCGCCACGCAGTTCGGGATACCCACCGGTACCTTATACGGCAGATGCAAGAGAGAAGGTATTGAGCTGTCTCGTTCGAACCCGACGCCATGGTCTGAAGACGCTATGGGGGAAGCGCTTGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAAGCGGCGATCCACTACAATCTGCCTTATTCCTCGTTGTACGGGCGCTTCAAGCGCTGCAAGTATCAGCCGCAGGGTCTTCAACCAATGCAACAAGAACTTCAGAAACCCCACGAAATGGAACACCACCACATACAGGAATTAAACCAGTATTACCACCAATCCGTCCCAACTCATACCATCCACCAAATGCTAGAAGACCACAATATTAACGACGATCACACAATTATGCACACAATTTTGCGCGAAGATCGCACGACTATACATGAAGACCACAGAGATATGCATGAAGATCAACGAATTATACACGAAGATCAAAGAACTATGCACGATGATCATAGAACTATGCATGATAACCATAGAACTATAAATGACGATCACAGGACTATACATGCAGACCAAAGGTCTATGCATGGAGAACAACGAATTATACACGAAGATCACAGGACTATGCATGAAGACCATAGAACTATGCTAGAAGACCATAGACCTATGCATGAAAACCACAGAATTACACACGCAGACCAAAGGTCTATGCAAGGAGATCAACGGATTATACACGAAGATCACAGGACTATGCACGAAGACCACGAAACTATAAATAATGATCACAGGACTATACATGAAAATCAACGGATTATAAATGTAGATCACAGGATTATGCATGAAGATCACAGAACTATGCACGAAGACCACGAAACTATAAATGATGATCACAGGACTATACATGAAAATCAACGGATTATACACGTAGATCACAGGATTATGCATGAAGATCATAGGACTATGCAAGAAGACCACAGAATTATACATAAAGACCATATGAGTATGCAAGAAGACAGACGAGTTATACACAAAGACTACACAAATGTACAGCATCCTTACATGCATCAGCATGGGATGCATATGGTACAAGACCCGTATAGCGGGCACGGACAGGCCATGTACTATGCGCAAAGCTGCCACATGACCAGTTGA
- Protein Sequence
- MPGYGLFQVKCEPSSEEEDSNSQFTYSYTNNKLITPELRPVKLELDSQRDHHVPAHLLQHLQGASSLEELAPPAPAGPAATPVCVKQEPTEPAGAATLETLESTPHANTSGSMLFDRHLSLSSLSACDSPDCSDFMPLVTVKDEPLSEGEQHTQSGDDTSDSSTQPEHARGSPKSWTQKDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGGAKSWGERELRAALLALRQGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRVDLERALASIRCGASSVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQGLQPMQQELQKPHEMEHHHIQELNQYYHQSVPTHTIHQMLEDHNINDDHTIMHTILREDRTTIHEDHRDMHEDQRIIHEDQRTMHDDHRTMHDNHRTINDDHRTIHADQRSMHGEQRIIHEDHRTMHEDHRTMLEDHRPMHENHRITHADQRSMQGDQRIIHEDHRTMHEDHETINNDHRTIHENQRIINVDHRIMHEDHRTMHEDHETINDDHRTIHENQRIIHVDHRIMHEDHRTMQEDHRIIHKDHMSMQEDRRVIHKDYTNVQHPYMHQHGMHMVQDPYSGHGQAMYYAQSCHMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -