Hpse005277.3
Basic Information
- Gene Symbol
- osa
- Assembly
- GCA_947369225.1
- Location
- OX376311.1:29303819-29329611[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-26 1.5e-22 80.1 0.0 2 89 274 358 273 358 0.94
Sequence Information
- Coding Sequence
- ATGCGCCGGCCGATGCGTCCGCCGCCGCACATTACTGGCGTGGCGTTACCTCAGAATCGTGATATTGGTGCATTTCGCCTTCAGGAATGCACGCAGAACGTACCAATGCCGCCGCGAACGTCGTCGTCGCTGCCGGATGGCAGCGGTGGGGCGGCGCGGGGCGCGGGCGGCGGCGGGCCCCCGGGGCCAGCGCCCAGCCCCGTGCCGCCGCCCGGGCCCATGGTGGCGCAGCCCTATGGGCACCACCCCGGCTACAAGGCGCAGCACTACCCGCCGCCGCAGTCCTACGGCTATCCGCCCAGGAACCACCACCCGTACCCGTACGGTGGCTACCGTCCGCCGCCGCCGCATCCACCGCAGCACTACCCACCGCTCAAGCAACAGGGGCGGCACATGGGCCCGCCGGGACAGGCGGGCGCGCCCGACGGGGCGATGCCGCCGCCCACGGCACCGGGCGAGGCGCACGACAACGGGCCCGCCGCGCCCgccaccgcgctcgtcaccaccgggcccgacggagcgccgttggatgagggaagccagcaaagcacactaagcaatgcttcggcagCGTCAGGCGAGGAGCCGTGCGGCACGCCGAAGGGTCGCAAGGAGTACGGGCCCGGCAGCGCGGCGCCGTCCCCGTCGCCCGGCGGCGGGTCGCACTCTTCCGTGCACGACGACTACGACGCGTCGCCGTCCTCGTGGCCGCGCCCGCCCTCTAGTCCCGTATTTAACAGTCACATGCAACCGGAGTCCTACAGATCAAAGaagtcggactcgctgggaaagctgtacgagatggacgacgcgcccgaacggcgcggctgggtcgagaggctgcttgccttcatggaggagcggcgcacgcccatcgcggcctgccctaccatctccaagcagccgctggatctctacaggctctacttactagtgcgcgagcggggtggattcgtcgaggtgacgaaaaacaaaacgtggaaagacatagcgggccttctcggtatcggtgcttcttcgtcggctgcatacaccctccgcaagcattacacgaagaacctgctcgcgtacgaatgtcacttcgaccgcggtgggatcgacccccagcccatcatcaaccaggtcgaagcatccacgaaaaagaagaGCGGGAAATCTAATAGCAACTCCAGTGCAGGGTCGTCAAATTCGCAAGAATCATTCCCGGGTGGCGGGTCCGCAGCGCCTGGCGCGCCCATGGACGGGTATCCTGGCCAGTACGCTCCCTATCCGCCACAGCCCAACCAACCTCAAGGCGGCGGGCCCGGTGGCGACAACCTCGCCGCCTCCAACCCTTTCGACGAGCCGCCGGGGCCCAGGAGACCCCCAGGATACCAGCAAGGATACGGGTACGAATACGGGTCACCTTACCCTCCGCCATCCAATAGACCAGTTTATCCACCATATGGACCGGATGGAGACAGAGGGTACGGTTCAGGCGGGGAGTACCGCTACGGCGGCTACAGCGGCGGATACCGCGCAGGCGCGCCTCCGCCGCCCGGCACGCCGCCGCCGGCGCAGCCCTACCCCGACTACTACCGCCCGCCGCATCCGCCACATCCGCCGCACCCGCCGCATCCGACGCATCCGCAGCATCCGCCGCACTCGCCGCAGCAGCCGCCACACGAGATGTCGAGCGCCGCGTCGTCTGTCGGTAACCTAATGAGCTCGCAGCTCGCTCGCCAGCTGGTGGCGCCGCTGCCGCCCAGCCAGCGACCCTACTACGGCGGCGGGAAGCCGCCAGGGCCGGGCGCAGTGAACGCGGGCGCTCCGCGACGGCACCCTGACTTTGCGAAGGCGGAGGGCTACCCGGGGCCGGTGACGGGGCCGCCGCCAGGGGGCGCGGGCGCTCGGTTCGGCGGCGCGTGGACCGGCGCCTTCCCGCGCGCGCCGCAGCAGCAGTCCCCCGCCGCGCCCTGGCGCCCGCCCGCCGGCGCCGCACAGCCGGCTGGCTGGCCACACCAGCCTTATCAGCAGGGCCCGGGCGCGCCGGCGTGGGCCGCCCGCCCGCCGGGGCAGGACGCCTACCCGCCCTCCGCCGCGCCCTCGCCTGTATCGGCGCCGGGCTTGGGTCCGGGACAGATAAAGCGTGAGCTGACGTTCCCCGCGGAGTGCGTGGAGGCGGCGGTGCCGACGGGCGACAAGCGGCGgcggctcacgaaggcggacgtggcgcccgtggacgcgtggcgcatcatgatggcgctcaagtctggtctgctcgccgagacctgctgggcgctcgacatcctcaacatcctcctgttcgacgacaactgcatcggctacttcggcctccagcacatgcccggcctgctcgacctgctactcgaacatttccacaagagtctcagcgacgtgttcgacTCCGCGACGCCCGACGACGAGCACTGGTCCTGGTACGCGGCGCCGCCCAGCGTGGAGCCGCCCGTAAAGAAGCACGTGAAGGCCGAGCCGCCCGACCCCGCCGACCGCGTGAGTGTGCTCTCCGGCGAGAACTACACGATGGAGTCGCGGCGCCGGCACCCCGTGACGTACCGGTCCGACGACGAGCTGTTCGCGCCCGACGACTGCGAGTCCGATTCGGAGCGCGTCGAGGACGTGCTGGAGCCCTGGCAGTTCGGCGGCGACGCGGCGGCGGCTGGCGCCGCGCACGTGATGCCCTGTTTCCGCGGAGAGTTCGTGCACCTGCCCTTCGTGCGGGTCATGCCCGGCGAGCGCCCGCCCTCCCCGCCCTCCCCGCCACCGCCGCCGCCCGCCGACGACGCGGAGTCGCCGCGCGTCAATTCGGAAGCGGACGCTGCGGAAACGACAGAGCCCGATGACGGCGACCGTGATAACCTGGAAGCGGAACCCATGGAGTTGGAACCGGAACGGCGGCCGACGCTGCTCACCAGAGACCCGGCGGGCGTACTGAAACGTCGCCGCTTAGAAGATTACgaggacgagtgttacacgcgcgacgaacctagcctcaacttagttaacgagtcgcgtgacgcactagccaaacgttgcattgcgctttcgaacattctacgtgggctgacgttcgtgcccggtaatgaagtggagttttcgcggtctagtgctttcctagcgctcgctggcaagttattacttttgcaccacgaacacgcgcccagggcggcgagagcgcgcgcctacgagcgggcggcgagggacgaaagcgacgcggaagcgtgctgttccagtttacgcggtgaaagcgagtggtggtgggacgctctcgctcagctgagggaggacgcgctcgtgtgctgtgccaacatagcgggcggcgtggagctggcggggcagccggaggcggtggcgcggccgctgctcgacgggctgctgcaCTGGAGCGTGTGCCCCGCCGCCGTGGCGGGCGACGCGCCGCCGGCCGCCGCCGCCTCCTCGCCGCTGTCTCCGCGGCGGCTGGCCCTGGAGGCGCTCTGCAAGCTGTGCGTGACCGACGCGAACGTAGACCTAGTGTTGGCGACGCCGCCGCGCGGGCGCATCGCGGCGCTGTGTGCGGGGCTGGCGCGCGACCTGTGCCGCCCCGAGCGGCCCGTCGTGCGCGAGTTCGCCGTGAACCTGCTGCACTACATCGCGGGGGCGGGCGGCGCCGCGGCTCGCGAGGTTGCGCTGCATGCGCCGGCCGTGGCGCAGCTGGTGGCGTTCATCGAGCGCGCGGAGCAGACGGCGCTGGGGGTGGCCAACCAGCACGGCGTGGCGGCGCTGCGCGACAACCCGGACGCGATGGGCACCTCCCTGGACATGCTGCGGCGCGCGGCCGCCACGCTGCTGCGGCTGGCCGAGCACCCCAAGAACCGGCCGCTGATCCGCCGCCACGAGAGGCGCCTACTGTCGCTCGTGATGAGCCAGATCCTGGACCAGAAGGTGGCGCACGAGCTGGCCGACGTGCTGTACCACTGCAGCCAGCACAAGTGCGAGGCGGACGCGCCGGAGGAGTGA
- Protein Sequence
- MRRPMRPPPHITGVALPQNRDIGAFRLQECTQNVPMPPRTSSSLPDGSGGAARGAGGGGPPGPAPSPVPPPGPMVAQPYGHHPGYKAQHYPPPQSYGYPPRNHHPYPYGGYRPPPPHPPQHYPPLKQQGRHMGPPGQAGAPDGAMPPPTAPGEAHDNGPAAPATALVTTGPDGAPLDEGSQQSTLSNASAASGEEPCGTPKGRKEYGPGSAAPSPSPGGGSHSSVHDDYDASPSSWPRPPSSPVFNSHMQPESYRSKKSDSLGKLYEMDDAPERRGWVERLLAFMEERRTPIAACPTISKQPLDLYRLYLLVRERGGFVEVTKNKTWKDIAGLLGIGASSSAAYTLRKHYTKNLLAYECHFDRGGIDPQPIINQVEASTKKKSGKSNSNSSAGSSNSQESFPGGGSAAPGAPMDGYPGQYAPYPPQPNQPQGGGPGGDNLAASNPFDEPPGPRRPPGYQQGYGYEYGSPYPPPSNRPVYPPYGPDGDRGYGSGGEYRYGGYSGGYRAGAPPPPGTPPPAQPYPDYYRPPHPPHPPHPPHPTHPQHPPHSPQQPPHEMSSAASSVGNLMSSQLARQLVAPLPPSQRPYYGGGKPPGPGAVNAGAPRRHPDFAKAEGYPGPVTGPPPGGAGARFGGAWTGAFPRAPQQQSPAAPWRPPAGAAQPAGWPHQPYQQGPGAPAWAARPPGQDAYPPSAAPSPVSAPGLGPGQIKRELTFPAECVEAAVPTGDKRRRLTKADVAPVDAWRIMMALKSGLLAETCWALDILNILLFDDNCIGYFGLQHMPGLLDLLLEHFHKSLSDVFDSATPDDEHWSWYAAPPSVEPPVKKHVKAEPPDPADRVSVLSGENYTMESRRRHPVTYRSDDELFAPDDCESDSERVEDVLEPWQFGGDAAAAGAAHVMPCFRGEFVHLPFVRVMPGERPPSPPSPPPPPPADDAESPRVNSEADAAETTEPDDGDRDNLEAEPMELEPERRPTLLTRDPAGVLKRRRLEDYEDECYTRDEPSLNLVNESRDALAKRCIALSNILRGLTFVPGNEVEFSRSSAFLALAGKLLLLHHEHAPRAARARAYERAARDESDAEACCSSLRGESEWWWDALAQLREDALVCCANIAGGVELAGQPEAVARPLLDGLLHWSVCPAAVAGDAPPAAAASSPLSPRRLALEALCKLCVTDANVDLVLATPPRGRIAALCAGLARDLCRPERPVVREFAVNLLHYIAGAGGAAAREVALHAPAVAQLVAFIERAEQTALGVANQHGVAALRDNPDAMGTSLDMLRRAAATLLRLAEHPKNRPLIRRHERRLLSLVMSQILDQKVAHELADVLYHCSQHKCEADAPEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00275025;
- 90% Identity
- -
- 80% Identity
- -