Htri009541.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010000855.1:4247327-4253329[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00043 0.036 14.8 0.1 1 23 159 182 159 182 0.96 2 13 0.0015 0.13 13.1 2.9 2 23 231 253 227 253 0.89 3 13 0.094 7.9 7.5 3.6 2 23 429 451 428 451 0.95 4 13 0.0036 0.3 11.9 0.5 1 23 522 545 522 545 0.92 5 13 7.8 6.6e+02 1.4 0.0 2 13 564 575 563 580 0.81 6 13 0.00072 0.06 14.1 3.3 2 23 596 618 596 618 0.96 7 13 0.00041 0.034 14.9 0.1 1 23 723 746 723 746 0.95 8 13 0.00042 0.035 14.8 0.1 1 23 797 820 797 820 0.93 9 13 0.0012 0.1 13.4 2.2 2 23 870 892 869 892 0.97 10 13 0.0014 0.12 13.2 1.6 1 23 982 1005 982 1005 0.92 11 13 0.14 12 6.9 1.5 1 21 1057 1077 1057 1078 0.95 12 13 1.1 90 4.1 0.1 2 22 1123 1145 1122 1147 0.61 13 13 7.4 6.2e+02 1.5 1.3 1 13 1165 1177 1165 1189 0.73
Sequence Information
- Coding Sequence
- ATGGAAGGTATGGACCTGTGGACGTCTATGTTTTCGGCTGACTTTGAGGAGGGAGACGCTGAGGCAGACAATTACAATAATGGCAGCAACCTTCATGCAGACGAGTTTATGGGTGAAGACGAAGAGGAGGAGCATGAAGCTGAATTCGACGAGGTCGATGACAACAGGGTGGTTCAGAATAGAAGGAACAATAAAAAAGGACACGAGCCTGATGACAATgccatatttaattttgaactgGAACCTATTGTAAGTATTGATGAACCAATATCGAAGACAGCGACAAGAGGATCTCTTCCATTGGCACCATCAATGCCAACTGAAACACTTGTGCGCCCCATGCACCGTCAATCAATGCCATCCATGTTAGGTCGTGGAGCAACTGGAACAGGGCCACCAACGCGTACAACAACTTCACAAATTAATGCGACCGATGAGAATGGAGTCCCAATCAATTATGAACTGGGTGTTATCTATATATGCCCCGCATGCGGCGCCGAATATCGACAGCAGGACATGTGGAAGCGTCACATGAACCAGATGCACCAGTATAACACACGCAGAGGACTTaattttgttgccattgaTAAACTGTATCATCGTTGTTTGGAGTGCAATAAACGTATTGCGATGCACAGTCGTGAGAATCTGTTAAAGCACAAGTTTACCCATTTGCCATATCGTTGCACCAAGTGCTATATCTGTAAGCGAGAATACAAGTACAGGCAGGACCTGATGGTGCATCTGCGTATGGTGCACTGCGAAGAGGTTGTGACCATGATGCGCGCTGGCGATGCTAGTGCCGGTCGGAAAACGCGTGTGCGCGAACCACGCACCGAACAACATCATGGTCCGTATGCCCGCCCAATTATTCATAATGATGACGATGCTGCAGAAATCCGGATTGACCGAACACAATCTGATATGAGTACGCCAGGAGATGAGTCCAACTTTGGTTTTGATGACGATCAAACTTATAGCTCCAGCCAAGTATCATCTGCCAAGAGGAGGCGTAGTCATCCAAATCAAGGAAATGGTGCCTCAGATCTTTGCGAGGAATACATACATTACATGTGCCCGGATTGCTGCACCGACTGTGATACGCACGCCCAGTGGAGTCAGCATATCGAGTTCGTACACGACTATGTTAGCCGGCGCGGTCTCAACTTTCGTTGCGTGGACATGCAGATGCAGTGCCTTGAGTGCAACCAGTTTGTTATCCCGAACACCATTAAGACGCTGCGTGCTCACAAGTTTAGCCATTTGGCGCAGCCTGAATGGTTGCGATGCAAGTTGTGTTACAAGGGTTATACGGAGCATCATGAGCTGGTTACGCATTTGCTGAAGCAGCATAATTTCGATAGTTTAATTACCGAAGATGATGGTACATCAGCTAGTGCCAGCGCTGGTCCAAGTTCGGGTGATGTTGGCCAAGAGAAAAATGATAATGGGTATGGTGATGGCAATGGTGATGAGTATGATGAATTGCTTTCACATTTAGATGATCCGCCACGTCGCGGGGGTCGCATTGGCATCGACGACATGTACGAACCGCACATTGATTATTTGTGCCCGCAGTGCGGCAGGGAGTTCATCGAAAAGAAGCACTGGCGCATGCATGTCGTCAAAGTACATGGCATGAACGATCTGGCCAAATTGAACTTTGAGATGATCAACGATCGTCAGCTGAAATGCACCGAATGCGAAAAGATTATCACCAATGCGTATGGTATACAAAATGCACAACAACATCGCATCACCCATCTGCCATACAAGGCCTATGCCCGCTGTCGCAAATGCCACAAATCGTATACGGATCGCAAAGGTTTGGTCAAGCATTTGGCCACATACCATCGTGTTGGTTATGAGCCCCGTAAGTCTGGTGGGGGAACCGGAATGGCTTCGACGATGGGCTCAACTGAAACTGGACAGACATCTAAGGGTCCGTCTCAGCGCAAACAAATTGTGACTGTGGGTAGTGAAACATATGAGATAACTTATTTGGATGATGAAGAGCAATCACCGCCCATCAGTAGCAGCAATTTCGAGGAGAACGATTTCGGTGAGCAAATGCAagccgatgatgatgattatgccACAAACAACAATGCCACCTCAACGAATAGTCGCCATTTACCACCAAGTGGTGCATCCAATCCGAATCGCTATAAATGCGTTGACTGTGGATCCTTATTTTCAACACAGGCAGCACTAAAGATTCACATTAGTGAGGAGCATGATTTTTCTGAGACGCAATACAGTGCCAAAAGGTTTGACAACGCTAAACCAACTAACGAGGAACCTACGACCTCAGCTATGGCTCCAGTGGCAGCCACAAGCACCAGCAACACAACatcgacagcaacaacgacaaAacagaattatatatttctctgcCCCTCGTGTGGAGAGGCTTATAAGACGCAATTTGAGTGGCGTCGTCATATCAATGAAGCGCACAACTTTGATAAGCGTCAGTATTTGAAAATGCGTCAGTTGGATAAGTATCGCTACCAGTGTACACTGTGCGAGGATATTGTGTGCAATTCAAAGTTGAAGGGTTTGCAGGATCATCATTTTCGACATCTGCCCTATCGACTGTATTTGAAGTGTCTCGTCTGCGGCACCTGTTATAATCATAAGCCCAACATTGCGGCCCATTTGCGTACGCGTCACAATATCTATGACCGCGACTCGTCGTGGCGTGAGACGCAGCCGACGGGGCAGCAAGGATATGTGAATAGGGATAGGGATACAGAAGGGGATAATGAAACGCGTGCAATGTCTTCCAACTCGCCGTCGCCAACTCTTGCCATCACCAGTGTAACTTCGGGACGGTCCCTAAAACCTCTACCAGGTGTGCTTCCTACCCGACCGGCTGGACTAAATACGTTGGAGGATAGCATTTCATATCATAATGCTGTGGATCTAGATTTCATTACGTATTATTGTCCCAAGTGCAACAAGAACTTTGACTCCCACGCCTTTTGGCGCAAACACATCGTCGAGGAACACAACTACAATAGTCGCCAGGGTCTTAATTTCCGCCAAATCGACAATCATCACTATCTTTGCCTGGAGTGTTATAAGCGTGTAACTGTTACACACACCAAGGGAGCCATCGGGCAACTGCAGTCACACAAGTTCCGACACTTGCCATATCGCTCCTTTAAGTGCTTGACCTGTTCGGGTGAATTTGTACGGAAGCAGATGTTCTTCAAGCATCTCAATCGGGACACAAATCGCTGCGACAACAGGCCTCTTAGCATCcacgataatgatgatgatgtgacTCAGTCCGAGAGTATCAGCGAAATAGAAACAGTGACAATTGACGATGAATTTGATCCCGCTTGTTATCGTCTGATGTGCCCGCAGTGTGGAGATAATTTTACTACCCCCAGCAAAGCACTCTGGCGGgaacatattaatataaagcATGGGCTGGGTAAACGGGAGCTGCTGCATATGCGTAAAATGGGGGAGGAAATCTATTGTTGCACGGACTGTGACGAGCAGGTCGTTACTAAGAAGTTACGTGTGCTGCAGGAGCATAGATTTAGACATTTACCTTATGCCGCCTATATACGATGCCATCTATGCGAAAATCGACAGGATGGACTGGGACACGGTTCTGCTGCAGCAGGGCTGCACAGTATGCGCGAGTTACAGCAACACATAAAAGACCATCATCCGGACGAGGCTGAGAACGTTGAGCAAATGCAATCGCTGGTGGACGAAGAGGATAATGAACAGGCTAACGATGAATTGGTCAATAGTTCATACATGCCTATGCCACCTCATTTGCTGGACGATGATGTGGATGATCTGGAGTTTGAAGATCAATATCTGTTGGGCTAA
- Protein Sequence
- MEGMDLWTSMFSADFEEGDAEADNYNNGSNLHADEFMGEDEEEEHEAEFDEVDDNRVVQNRRNNKKGHEPDDNAIFNFELEPIVSIDEPISKTATRGSLPLAPSMPTETLVRPMHRQSMPSMLGRGATGTGPPTRTTTSQINATDENGVPINYELGVIYICPACGAEYRQQDMWKRHMNQMHQYNTRRGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCEEVVTMMRAGDASAGRKTRVREPRTEQHHGPYARPIIHNDDDAAEIRIDRTQSDMSTPGDESNFGFDDDQTYSSSQVSSAKRRRSHPNQGNGASDLCEEYIHYMCPDCCTDCDTHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECNQFVIPNTIKTLRAHKFSHLAQPEWLRCKLCYKGYTEHHELVTHLLKQHNFDSLITEDDGTSASASAGPSSGDVGQEKNDNGYGDGNGDEYDELLSHLDDPPRRGGRIGIDDMYEPHIDYLCPQCGREFIEKKHWRMHVVKVHGMNDLAKLNFEMINDRQLKCTECEKIITNAYGIQNAQQHRITHLPYKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKSGGGTGMASTMGSTETGQTSKGPSQRKQIVTVGSETYEITYLDDEEQSPPISSSNFEENDFGEQMQADDDDYATNNNATSTNSRHLPPSGASNPNRYKCVDCGSLFSTQAALKIHISEEHDFSETQYSAKRFDNAKPTNEEPTTSAMAPVAATSTSNTTSTATTTKQNYIFLCPSCGEAYKTQFEWRRHINEAHNFDKRQYLKMRQLDKYRYQCTLCEDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIYDRDSSWRETQPTGQQGYVNRDRDTEGDNETRAMSSNSPSPTLAITSVTSGRSLKPLPGVLPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEEHNYNSRQGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCSGEFVRKQMFFKHLNRDTNRCDNRPLSIHDNDDDVTQSESISEIETVTIDDEFDPACYRLMCPQCGDNFTTPSKALWREHINIKHGLGKRELLHMRKMGEEIYCCTDCDEQVVTKKLRVLQEHRFRHLPYAAYIRCHLCENRQDGLGHGSAAAGLHSMRELQQHIKDHHPDEAENVEQMQSLVDEEDNEQANDELVNSSYMPMPPHLLDDDVDDLEFEDQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -