Htri018187.2
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010001311.1:15554359-15559460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00047 0.039 14.7 0.7 1 23 140 162 140 162 0.98 2 14 5.5 4.6e+02 1.9 3.0 1 23 168 191 168 191 0.96 3 14 0.00019 0.016 15.9 1.2 1 23 391 413 391 413 0.98 4 14 0.43 36 5.4 0.4 1 23 469 492 469 492 0.93 5 14 0.0013 0.11 13.3 1.9 3 23 763 783 762 783 0.92 6 14 0.049 4.1 8.3 1.4 1 23 789 812 789 812 0.98 7 14 2.1 1.8e+02 3.2 1.6 3 23 850 870 848 871 0.80 8 14 0.0043 0.36 11.7 0.8 1 23 892 915 892 915 0.97 9 14 0.0011 0.09 13.6 0.9 1 23 1154 1177 1154 1177 0.90 10 14 0.0003 0.025 15.3 4.2 1 23 1190 1212 1190 1212 0.98 11 14 0.011 0.9 10.4 0.2 2 23 1218 1240 1217 1240 0.94 12 14 0.001 0.086 13.6 4.5 2 23 1247 1271 1246 1271 0.90 13 14 0.41 34 5.5 0.7 1 23 1276 1298 1276 1298 0.93 14 14 1.6 1.4e+02 3.5 1.2 1 23 1304 1327 1304 1327 0.93
Sequence Information
- Coding Sequence
- ATGGCGAACAAACAAGTGAAAACAGAGCACAAGGAAATCGATTTCAAATTTGCGTGTCGCTGTTGCTTGAAGTCCGAGGCGGAATTCTTCAAGCTGGATATGCTGACAGAAGGTGTCATAGGCGACAATAACGAGACCGCTGCAAAGTTGCCCCTGATACGCTTACTTTTATTCTGTATGCGCACAGAAAATCTACCCGAGCTTCCTCAATACATTTGCGTAGACTGCAGCAAAAGCCTGCAAATTGCttacttatttatacaaaacGGTTTGCGTGCACACGAAATATTGTGCCAAAAGTTGTGCCCTGGTAAACACAAGACCACAACTCGTTTCAATGGCCATCAGCCGAAGCTATTTGAGgcTAGCAGCCAAAGAGAGGCGCAACTGCCGAAGCCTCTTAAGGCCACCGTCCGCCACGAATGTAAAATCTGCGGCGCGATTATCTACAATCGGTTTGAGCTCAAGCAGCACATACGCATGCACACTGAAGCGTCGAGGCATAACTGCAAATTGTGTAGTTATGTGACGGTGAAGCATCGTTTGCTGCCGGAACATTATCGCACAGCACACGGCCTGACTGCCGCCCAAATTGAACAGCAACTTAAGTTCAGAAAATCCATATTGCCTGATGAAAAGGCAACAACTTCATCAGCCGCTTCGGACGACGGGCAAGTAAAGGTTTGCACACTGGAAGACATGGAGCTGTTGATACCTACTGTGCTAACGCCCGAAGACTTTTCGCATCCTAAATTGGATGTAGATCAACTGCGTGATATTGAAAAGCAATTGACAAACTCATTGTCCGCTGACCAGCCTAGTTCACATTCAGctacaactgttgctgctgctgatactTCGCTAGGCACTAGCAATAATGTAAGCATAGGTGCAGAGTTTTTGGTTCTGCCCGATGGTTCTCTACAACAAGTTAACGACGGTGGAGTTGTCTTCGAATACATTGATGATAGCATAGAAACCAatacaacgacaacaacaccgCCGACCAATATGAATCTTCAGACTCTCTTAAGTGACACAAAACCGGATACAGTTTATAATAATGCTATGGATGTTGATATAAACCATATGATTGTAGAAGAAGCGTTACCGCAGATAAGAGTAAAACCAAAGTTAAGACCAGCACCAGCGTCAATTGCCGCCCTGAAGCACAGATGCAAACTGTGTCCGAAAGCATTTCCCACGGTGGCACGTTTGAAATCTCATCAGCTAACGCACAGTCATCTACCTAAATTCTATTGTGACCAGTGTGCCTACTACTCGCTGCGTAGTGCCGATCTTATACAGCACTACACAATTCAGCATAAGACATCCATTAGTGATACTAAAAATAATCTGCTGGCAAGATCGCTTTTGCCTCTGTCGGCGGACAAGATTCGTACATTTTCCTGTGACATGTGTCTTTTCGAGGCAACAAGCAGTGGTCAGCTACGTGTACACTACAGTGAGAAGCACCTTATAAAGCCCAATGAGGTACAGCTGCGTCCAAGCTGGACCAATGACTCGACGGGACTTCTTAACAGATCGGCGCGGATCGGTGATGGTCGAAAACAATTGACAAATGTAAAGCCAGTCATTCCGGATATCCCACTAGGTATTAAATACCCAAGCACGGCTTCGGAAGTAATAGctgaaacaacaataacggaGCATAAGCTGCCGCAAGCAACAACTACTGCAGTGTTAACGCCAACCGGCGAGATTAATGTGGTTGTTGATGCCTCCTCATTGTTTTATGCGGCAACTGCAGAAGTTAATCCAACATCTGAGACGGCAACTGAAACAGCAGTCACAACAGCCACAGATTCAAGcacattttcaatatttccaGAGCAGTCTTTTTCTAATAACATGACAGCAACCACAATATCAGATCATCCAAGGGAAGTGATGCCTGCTCCAGCCACAGCGAATGCAAACTCTAATGTCTTTGGAGATATGCAGGAATTTATTGATAACACCGATGTAGCTGCCATTTGTACCATACCCGCTGACGATATGCCTGTAGTCGACGGCGATGATATTgttatagataataataatataagccTGGATTTTGATACTGAAAATCTATTTGAAGACTTTGAAGAGGACGTAGAGGTGGGTGAAGATGATGAAGAGGAGGAAGATGAAGATGACGCCGAAAATGATGACGAGAATGAAAATAATGAGGCAGCTACCGATCAAAATTTGATGCTCAccagcgatgatgatgatgtggatgACTTTGATGACGAACAATCGAAGCATCTTCAAAAACCATATTGCATATATTGTAACAAGAAGTTTACCAGCCAGTACAAGTTCGAGAATCATATGTTTATACATCGCGGTTTGGCGCCCTATCGCTGTGAACTGTGCACCAATCTGTACAATATGAAACGGTTGCTAATACGACACTATAAGACGGTGCACAAGCGCATGCCTAGTCGGGACATGGTGCAGGCGAAGGGTGACAAGGTATCCGTACCGCGCACTACTATTGAAAAGATTAACATCAATATTGACAAACCTACTATGCTGATGTGTGCTAAGTGTCCTTTCGAATGCGAAGTGGAGACTGAGATGCGTAAGCATCTAAACGCGCATCATGGCATCAACGATGGCGTCTCTGTGCATGCTAACGAGGTGTTTATCATTCGAAAATTGCCTTTTGAGTGTCCACGCTGCATTCGCTCATTTGCGGCCAAGCGTACGCTGACTCGTCATCTACAACGTAGTCATTTAGTGGACACAATCATTGAGATGCAGTCGCCTCACCCGATAACAAATTCAACGGCAACTACAACCACACTGGCGGCTACAACCACATCTCAGACGAATGACAGCGatgacaacaaaacaacatcGCAGCATGAGCTCCACCGGATGGAATCTATAGAGCTGCCTGATGCTGGGattggcgatggcgatggcgatggaaAAAGCGCAGAGAATCTTATAGACAGCGACACCGttggaaaaatggaaaatccaGATACACAAACAATAGACTCGACAACATCACCAGTTACAGAAATAACATctacagcagccacaacatcATCCACATCAAGTGCAACACAAGTATTAAATACAGCAGCTACAGAAACAACTATAACGACAACTGaaacaaacgaaacaacaGACACAACGGCAGCTTCATCATCCGCTTCAATtcaaacagaagcaacaacaaatgacgCACCACAAACTGAACCAACTACTACGACAACAGCAGACTCCACGCGTTTTCCAACGCCAGCGgcatttgactttgattttgattttattggcAATGGAACGCCTGCTACGCCCACTAAAAGCGAGAACAGCGATAGCTTCAATATAACACCAATCGCCCATCAACTCTTAAATGGCAGCGATAAGCTACTGACTGCGGCCCTGGAACCATCGCCAGTTAAAGATTTACGCTCTCGTCTTCCGCGAACTCCTATTTTTGTGTGCAAGCAGTGTAACCAGACTTTTGATCAGTTAAGCAAGCTCTTGCAACACGAATTGGATCAACATTCCAGTGACACAGTGTCGCCGCGTAACAATTACCAGCATCAGtgcaaaatatgcaacacCACATACCGTACAGTGACCTTACTTAATTACCATATGAAGCGGCATGCGGCCAATAAAGTTAAATGCAAAGAGTGTGCCAAGGAATTTTCTCTTACTACGGATTTGGAAAACCACGTTCAGGCGGAACATCGCGCCAAGTTGTCCCTTAAATGCGGTATGGATGGCTGTAAGAAGACTTTTAATTACAAACATCATCTTAAGCGTCATCAGACAGCCTCCCATATGGCAATTAAGTATTTATGTCCAACGTGCGGGCGCGACATGCTCACCAGTCTGCATCTAAGGAATCACATGGCAAGCCACAAAGGCAAAAATACTTACAAGTGCCCCAAGTGTATTCGCACCTATTTGCGCCGCAACCCTTTTCGAAGGCATGCGCTGCGTGAGCATAAATGGGACCCAACTGATGAGGAAattagtaaaatatattttgtaaacgATGCGTCAACTTCCAAACTGCTCAATCGTAAAACGAACAAGATTGAGAATAAGGTGTCTGATTAG
- Protein Sequence
- MANKQVKTEHKEIDFKFACRCCLKSEAEFFKLDMLTEGVIGDNNETAAKLPLIRLLLFCMRTENLPELPQYICVDCSKSLQIAYLFIQNGLRAHEILCQKLCPGKHKTTTRFNGHQPKLFEASSQREAQLPKPLKATVRHECKICGAIIYNRFELKQHIRMHTEASRHNCKLCSYVTVKHRLLPEHYRTAHGLTAAQIEQQLKFRKSILPDEKATTSSAASDDGQVKVCTLEDMELLIPTVLTPEDFSHPKLDVDQLRDIEKQLTNSLSADQPSSHSATTVAAADTSLGTSNNVSIGAEFLVLPDGSLQQVNDGGVVFEYIDDSIETNTTTTTPPTNMNLQTLLSDTKPDTVYNNAMDVDINHMIVEEALPQIRVKPKLRPAPASIAALKHRCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCAYYSLRSADLIQHYTIQHKTSISDTKNNLLARSLLPLSADKIRTFSCDMCLFEATSSGQLRVHYSEKHLIKPNEVQLRPSWTNDSTGLLNRSARIGDGRKQLTNVKPVIPDIPLGIKYPSTASEVIAETTITEHKLPQATTTAVLTPTGEINVVVDASSLFYAATAEVNPTSETATETAVTTATDSSTFSIFPEQSFSNNMTATTISDHPREVMPAPATANANSNVFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDTENLFEDFEEDVEVGEDDEEEEDEDDAENDDENENNEAATDQNLMLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFIHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPSRDMVQAKGDKVSVPRTTIEKININIDKPTMLMCAKCPFECEVETEMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQSPHPITNSTATTTTLAATTTSQTNDSDDNKTTSQHELHRMESIELPDAGIGDGDGDGKSAENLIDSDTVGKMENPDTQTIDSTTSPVTEITSTAATTSSTSSATQVLNTAATETTITTTETNETTDTTAASSSASIQTEATTNDAPQTEPTTTTTADSTRFPTPAAFDFDFDFIGNGTPATPTKSENSDSFNITPIAHQLLNGSDKLLTAALEPSPVKDLRSRLPRTPIFVCKQCNQTFDQLSKLLQHELDQHSSDTVSPRNNYQHQCKICNTTYRTVTLLNYHMKRHAANKVKCKECAKEFSLTTDLENHVQAEHRAKLSLKCGMDGCKKTFNYKHHLKRHQTASHMAIKYLCPTCGRDMLTSLHLRNHMASHKGKNTYKCPKCIRTYLRRNPFRRHALREHKWDPTDEEISKIYFVNDASTSKLLNRKTNKIENKVSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -