Htri015438.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila trivittata
Gene Symbol
-
Assembly
GCA_035045065.1
Location
JAWNNK010001028.1:13775252-13779787[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.14 11 6.9 0.1 1 16 339 351 339 359 0.77
2 8 0.0052 0.44 11.4 1.7 1 23 757 780 757 780 0.94
3 8 0.0023 0.19 12.5 3.0 1 23 814 836 814 836 0.97
4 8 9.3e-06 0.00078 20.0 1.8 1 23 842 864 842 864 0.96
5 8 4.1e-05 0.0034 18.0 0.9 1 23 870 892 870 892 0.98
6 8 0.0081 0.68 10.8 1.6 1 23 898 920 898 920 0.96
7 8 0.057 4.7 8.1 0.0 2 23 927 948 926 948 0.96
8 8 0.00012 0.0099 16.6 0.6 1 21 954 974 954 975 0.95

Sequence Information

Coding Sequence
ATGACGCCAGCAGTTGAGGAGTTGCGTCAAAAATGCGGCACTGTCTATACCTGGAACTGTGCGGGCGAGTCATATGGCATCGAGTGTGAGCTGTGCGAGGAGCGACCACTCTGCGCCCTCGATGAGTTCGCCGAGCACATGGAGCTCTGGCATTCTGATTGGCAACAGGCGCCCGAGGATGAACTCATGCTAGAGGTTCTCGCCGAACAGTCCAGCGGCGGTGAGGTCAATGAACTCAAACAGCAACTGGTCCAAGAGCTCAACTCCCTAGATACACGGCAGACGCAACAGCTAGCCAATACTCTTCAACTGAACGATCGGATCACATTCGAAACGGATAGTGCGTTGCCCAGCGTGGAGAACCAGAAGCTGACGACAgagcaagtgcagcagctgATTGAGCTTTATAAGGCAGAGCCGCGTTTGTGGAATCAATCACATGCGGAGTTCAGGAACATTGATCTGGGCCGCGAATCGTGGCGTAAGATCACAGACGCTTGGAGCGCACACTGTGGACGTGGCTTCAGTGTGACGGATGTGCGCATAAGGATCTCGACCTTGTGTCAGCGTTTCCTTAAGCAGCGCGAACGTATAGAGATCGAGGGGGACCTGGATGATGGGTCCAAGTTTGTGCACTACGATCAACTGAAGTTTCTGTgcgagcagcaggagctgctgAAGCGTCAGGAGCACATAACACGCGAGAATCGCAAGCTGCTGGAGATCTATGAGCACTATCCCATCCTCTGGCACAATGCCCATAAGCGTCTGCGTTGCGTGGACACAATGCACAAGCGGCACGAGGCACATCGTGGCCTTCAGTTGGCGCTGCGCATGTGTGGCATCAAAATCTCTGGTCTGGTCATGCAGCGGCGGCTGCAGTCGCTCCGGAAGCGCTATCGCCTGGAGAAGATACGCTATCTGCACAGCATTGTTGAGGGGAGACATTCCGAGTTTGTTTCCGGCTTTGAGCACTATGCGGAAATGGAGTTCCTGCACAAGCATATCGATCCCTATGTGTGTGCCGTGTGTGGCAAGATCTTTGAGAATCTGCTGAGTCATCAGACGCATGTGCAGGGCAGCTGTGAGGCACAGCCCTTGATCAGGACTCACACGCCGGAGGCCACTGTGGGTGACATAATGgtgcagctggaggaggacATGTTGATTGAGCCGCCGCCAGAGCCCGTCCCAGAGCATGAGCTGGCCACAGAGGATCTGGTGGCGACACTGGATCAGGAACTAGACCAGCAACTAGATCCGCAGCTGGAACAGCAAATAGAGCAGCAACTGGAAACGGCGGAGGTCAGCGAACTGGTGGAACATCTAGCAGAAGAAGAGATGGAGGAACTGGAGGAGCTGGCACAGCCCGTGAGTGAGATATTGACTCCGCTGCCCATGTTGGCCGAGGTCTGTGCCGCCacagagcagctgcagctgcaggagcagcaccagcagcaacaggtgcagcaggagcagctgcagcagcaagaccaagagcaacagcaagtTCAGATGGAGGAGGGGGAACTGTCACCATCGACAGCTGTGGCAAGTGAAGAGCTCGTCGACGAATCCTCCGACGACAGCATGCCACCTGGCACCCAGCTGCGCGTCCGCCTCAGCCTACAACAGACGCACAAGCTCATTGAACTCTACCAGGTGCAACCCATACTCTGGGATCCCAATCATCTGGACTACAATGAACGCAAGCTGCGTCGCCAGGCCTGGCACAGCATTGCCAAGGAGCTGAACGAGTTCTCCGGCAGCAAGCAACGCTACAACTGGCACATGCTCCATCGGAAGCTCACGGACTATGCCAAGTATTATAGACGGGAGCGGCAGAGGGAGGCGCTGGCAGAGGAGGGCGAGGGTGGTCACACACGCTGGGGTTACTACGAGGCGTTTAGCTTTCTGGACGATGTGCTGCCCATCAGCCGCGTGAAGAAGTCCCTGCAGCAGCGGGACAGCAACCTGAAGATCATCCAGGTGTATCAGAGCTACGAGCAGCTGTGGTGCACAAATCATCCGGAGTACACGAAGCGCAAGCAGCGACAGCGTCAACTGGAATCGCTCTGCACCAGTCTGCAGGAGGAATGCAATCTCCAGATAACCGTGGAGCGTCTCAAGAACAGATTAATCGAGTTCCGTTGTCAGTATCGACAGTGCAAGGAAGCGCGTCAGGCCGCGGTGAAGCGCGGCGAGAGCTGGGTGCCCAGCTATGAGTACTATGAACCTCTCCAGTTCCTGGAGCTGCATGTCTCCCCCTTCGACTGCGCCCACTGTGCGGCCAGCTTCAAGCGTCGCACCGACTATCTGCGTCATCAGAGCAATGTCCatctggagcagctgcagcagctggaggaaATGCAACCACTGGGATTAACTCAGCCACGCAAACGTCGCTCCCGACGCGATGGCACCGCCAACGCCGTGGAGCACATTTGCCACATTTGCGCCATGAAATTCTCGCTGCGCACCAGCCTTCTGGCCCATCTGCGTCGTCATCTTGGCCAGCGCACACACGCCTGCAACGAGTGCCCCAAGAAGTTCTTCAACTCCACAGCCCTGCAGGTGCATCAACGCAGCCACACCAAGGAGCTGCCCTACGTCTGCGAGCACTGCGCCCGCGGCTTCGTCAATGCCAGCAAACTCAATCAGCACGTGAAGCGCCACCAGGAGAAACGTGATTATCCCTGCACCCGCTGCGACAAGGCCTTCTACTCGGCCCACGAACGCGATCGACACAATCGCGCCCATCTCAACATCCGGGACAAGGTCTGTCCCTACTGCGCTCGCGCCTTTGTCGTCGGCAGCGCCTACTACGCCCATCTCAATCTCCATCGCGGCGAGAAGCGCTACAGCTGTGAGACTTGTGGCAAGCGATTCGCCCAGTACGCGGGTCTCTACAAGCATCGCAAGCGTTGCACGCCCACCGAGCCAAAGGAGGAGTAA
Protein Sequence
MTPAVEELRQKCGTVYTWNCAGESYGIECELCEERPLCALDEFAEHMELWHSDWQQAPEDELMLEVLAEQSSGGEVNELKQQLVQELNSLDTRQTQQLANTLQLNDRITFETDSALPSVENQKLTTEQVQQLIELYKAEPRLWNQSHAEFRNIDLGRESWRKITDAWSAHCGRGFSVTDVRIRISTLCQRFLKQRERIEIEGDLDDGSKFVHYDQLKFLCEQQELLKRQEHITRENRKLLEIYEHYPILWHNAHKRLRCVDTMHKRHEAHRGLQLALRMCGIKISGLVMQRRLQSLRKRYRLEKIRYLHSIVEGRHSEFVSGFEHYAEMEFLHKHIDPYVCAVCGKIFENLLSHQTHVQGSCEAQPLIRTHTPEATVGDIMVQLEEDMLIEPPPEPVPEHELATEDLVATLDQELDQQLDPQLEQQIEQQLETAEVSELVEHLAEEEMEELEELAQPVSEILTPLPMLAEVCAATEQLQLQEQHQQQQVQQEQLQQQDQEQQQVQMEEGELSPSTAVASEELVDESSDDSMPPGTQLRVRLSLQQTHKLIELYQVQPILWDPNHLDYNERKLRRQAWHSIAKELNEFSGSKQRYNWHMLHRKLTDYAKYYRRERQREALAEEGEGGHTRWGYYEAFSFLDDVLPISRVKKSLQQRDSNLKIIQVYQSYEQLWCTNHPEYTKRKQRQRQLESLCTSLQEECNLQITVERLKNRLIEFRCQYRQCKEARQAAVKRGESWVPSYEYYEPLQFLELHVSPFDCAHCAASFKRRTDYLRHQSNVHLEQLQQLEEMQPLGLTQPRKRRSRRDGTANAVEHICHICAMKFSLRTSLLAHLRRHLGQRTHACNECPKKFFNSTALQVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHQEKRDYPCTRCDKAFYSAHERDRHNRAHLNIRDKVCPYCARAFVVGSAYYAHLNLHRGEKRYSCETCGKRFAQYAGLYKHRKRCTPTEPKEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-