Htri016703.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010001311.1:5336108-5340840[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.12 10 7.1 3.1 2 23 620 642 619 642 0.96 2 17 0.043 3.6 8.5 1.8 2 23 685 706 685 706 0.93 3 17 3.5 3e+02 2.5 2.1 2 17 717 732 716 743 0.76 4 17 0.031 2.6 9.0 0.6 3 23 776 796 774 796 0.95 5 17 0.00015 0.013 16.2 1.3 1 23 804 827 804 827 0.97 6 17 0.0011 0.091 13.6 0.4 2 23 832 853 831 853 0.97 7 17 9.4 7.8e+02 1.2 0.1 1 19 861 879 861 882 0.83 8 17 0.0068 0.57 11.0 0.8 1 22 901 922 901 925 0.90 9 17 0.28 23 6.0 0.8 3 21 932 950 932 951 0.90 10 17 0.017 1.4 9.8 1.0 1 23 970 995 970 995 0.96 11 17 0.029 2.4 9.1 2.3 2 23 1011 1033 1010 1033 0.94 12 17 0.14 11 7.0 3.1 2 23 1039 1061 1038 1061 0.92 13 17 0.038 3.2 8.7 0.3 2 23 1065 1087 1064 1087 0.96 14 17 0.00067 0.056 14.2 0.8 1 20 1093 1112 1093 1115 0.95 15 17 0.027 2.3 9.2 1.1 1 23 1119 1142 1119 1142 0.92 16 17 1.9e-05 0.0016 19.1 1.5 1 23 1148 1171 1148 1171 0.98 17 17 0.0077 0.65 10.9 0.1 5 23 1184 1203 1175 1203 0.89
Sequence Information
- Coding Sequence
- ATGTcgcaaattaaaaagaaaatcaatgaaaacgGGCCTAGCTGCCTGCATTGCAGAGTGCACGATTCAAAACATGAATATCAGGAGATATTTGATGAACTCGAACCCACAACATCATATACACTAGAATCCACACCAGAATCCACACCTGAATCCACACAAGAATCCACACCAGAACCCATACCAGAACCCACACCTGAACCCACACCTGAACCCACATCAGAACCCACATCAGAACCCACACCAGAACCCACGAAAGCACCCACCCCAGTACCAGCTCAAGTACCCACACCAGTACCATCTCCAGTACACACAAAAGCACCCACACCAGTACCAGCTGCAGTTCCCACAAAAGTACCCACACCAGTACCAGCTCCAGTACCCACTAAAGCACCCACACCAGTACTAAATCCAGACCCCACCCCAGTGGCAAAACCAGTGACACCACCAGCGCCCACAGCAAAGCCTACACTAGCACCTCAACCAGCGCCTCGACTAGGCCCTAGACCAGCGCCTACACTAGCACCTAAACCAGCGCCTATAGTAGCGCGTAAACCAACCATAAACCAAAAGGATGTAACACCCAtcctaataaataaaaccacaCCACCAAAAGTGCTAAGAGaaaagggCCAAGTGCCTGAAATAAAAACACCAGTACTTATTTCATTACCAACAAAAGAACAGACACCGTTGGCCAAACGCATAACCAGGGCCCATACAGGTGCGGTAACGGCAAAGATTTtgtcaataaaaatcaagGAACCACCTAAAGTAGAAGGAAAGCGGCGGTACTCCAAAGAAACTTTGCTTGGCCAGGAGGAACCGCTTAGTGCAGTGATATCAACTAAAGCAGTAGCAAAACGGCGGAGATCCAAGGAAACTGTACCCGGGGAGCAGGAACAGTTTACTGCACTCATACCAACTAAAGTAGTAGGAAAACGGCGGACCTCCAAGGAAACTTTACCCGGGGAGCAGGAACAGTTTTGTACACTGATACCAACTAAAGTAGTAGGAAAACGGCGGAGGTCTAAGGAAACTGTACCCGGCGAGCAGGAACAATTAGCTGCACTGATCTCAACTAAAGTAGTAGGAAAACGGCGGAGCTCCAAGGAAGTTGTGCCCGGTGAGCAGGAACAGTTTACTGCACTTGTATCAACTAAAGTAGCAGGAAAACGGCGGAGGTCCAAGGAAACTGTGCCCGGCGAGCAGGAACAGTTTAATGCCCCGATACCAACTAAAGTATTAGGAAAACGGCGGAGATCCAAAGAAACTGTGTCTGGTGGTCAGGAACAGATTAGTGCACAGATACCAACTAAAGTAGTACAAAAACGGCGGAGCTCCAAGGAAGCTGTGTCCGGCGAGCAGGAACAGTTTAGTGAACTTATACGTGACATTCTAGAGGATGGAGATGCACCTCCTGATGCGAAATTTGAGGAGGCGGCAGCAACTGTGCGTGAACTGGACACTCCGGAAGAAGATGGGCAAGTAGAGTTACAGGAGGTTGTCATAGAAGAGCAAGTCGATCTGGAAGATCAAGTGGAAATAGTAGAGCAAGTGGAATTGGAAGAGCAAGTGGAACTGGATGAGCCGGATAACAATGAAGAGGTGGAGTTTCTGGTCGAGGAAGCAGaaggAAGCACTGAGTCGGGCGTAAGCCACTTCAAGGTGTCAAAGAAAAGGAAACGCGAAACCTCCCAGTCCCAAAATGACACCCAAAGTGACGACGATGAAGTAAAGGTTGAACCCTTCAACTTTGTTTTGATCAAGGAATCTGATAACATTGGAGATCTTTACGACTATCTGGAAACTGTGGTCAAGACTTGCTTTGAAAGTTTGACTTTTGATTGGGCGACTGTCTGCCGTCATTGTACGTTGAAGAGCACGAAATATGAGGCCCTACTGAAGCACATGATGAAGCGACACAAGCTGCCCGACGAGCTGTACAAATGCCCCATTGATGGTTGCAACGCAGAAGTCCAGGGCGATAAAGCCTTGGCCATGCACTTGGTTGTGCTCCATGCGCCCGTAGCAGACATACCCATATATGGCAGTTGTCCTGAGTGTCAGATGACCTTCTCCAATATACTACAGTATAACAAACATTCTTGTGCCCATGTCATCAAGAAGCGTCGCGGCGTGCGCTTGTACTGTGAGATGTGCGGCATAGAGTTCCCCTCTTGGAAGCGCTTCAATTTCCATAATCAATTTCACTTGGAGCGGCACAGGCCACGCGCCTGTTTCGTGTGCAGCTACACGGACACGAACATTGATGAGCTCTTCCAGCATTTGCATTACGCACACGAGCCGGAGGGCACGCTCTTTTGTGATGTTTGTGATCGCAATTTCCGGGATACGGCTGTGTTTACGGAGCACAGCAAGTCGCACAACAATGTCAGCACCACCGTCTTCAACTGCACCGAATGCAAGGCAACCTTTGATTCACGCGGTCGTCTCAATAGCCACATGCGTTCCACACATAGTACTGTCATCAGCTGCGAGCTCTGCAGCCGCGAGTTTGCCACAGAGGCCACCTACAATATGCACATGAAGAAGCATTTGATCATTGAGCGTGAGGTGCACGTGTGCTCCACTTGCGGCATGCTCAGCGACAGTCAGGAGAAGATGTCGGTTCACGTTGATATTGAAGATGGACCATGCTTTGGCAACGAGGTATACGTGGAATTGTTGCGTGATGCTTATGTGTGTGACTTTTGCTCCAGTTACTTTAAAACCAAAGCAGATTTGCGTGCCCATCGAGACTCGGATACACATAAGGATGGTATATACTGGTGTCAGCCATGCAACAAGGATTTCCCGGACATGAAACTATATCGTCATCACATGCGCAACTTTCAGCAACTGCGCTCTGACATGGCCCATCGCAAACTGGAAATTTGTCTCTACTATATGTGTGACCATGAAGGTTGCTCGGAAGCGTACATCAATTGGAATTCTCTGTACACGCACAAACGGCGCCAGCACACCTTAGCACCAAGGCTGGATGGGCAATCCAAGGATGCGCAATGGGTCTGTCAGTTCTGCCAGAAAAAGTGCCGCTCCAAAATGTCCCTCTCGGTGCATGTGGCACGCAGTCACAACAACAATAATGTTGTTTGCTATCTATGCAAGTCCTCCTATAAGGATGAGCATAGCCTAAAGAAGCATCATGAGTACTGGCATGTACCAATGGAGTGTGAACTCTGCCTGAAGCTAGTCAAGAATCGTCGTAACCTAGACACCCACATGAATGTGGTCCACTCCAACAACAAGCGATACAAATGCGATATCTGCGAGAAAGGATTCTATCACAAAAGTGAAATGGTGGCTCATCGTTGGTTGCACAGCCAATCCTTTAACTGCGACCAGTGCAGCTTTACCACAAGGAACAAGAAGTCGCTATCGGTGCATGTGCTGGGACAGCACTTCAAGCGTTTCGCCTATGAGTGCAAGTCCTGCAATAAGAGCTTTGGACGTCGTCAAGGACTTACGAATCATATAAAACGTTTGCACGGCTCGAAGCTAACCTGTCGCGATTTGTTCGATGGAGGCTGCAGCAAATCCTTCGGCTCAGCCATGCAGCTCAACGTTCATGTGCGCAAGGTGCACAACAGCACCATTCATCTAAGTGACATATCCAAGATTGATGACGACTTTTCGGCTGACGATGTGCCATCCACATCAAAGAAGCGTTGCATACGCATCGGCGAAGATACACAGATTGAGTTCATAAACGAGGAAGCTGAAGATGATCCCAACGAATTGGACTCCGATGATCTTAAGAACCTTGAAGAAATCAAGCTCCATTCTCAGCCCGCAACAAAGAAAGAACGAGACAGCTAG
- Protein Sequence
- MSQIKKKINENGPSCLHCRVHDSKHEYQEIFDELEPTTSYTLESTPESTPESTQESTPEPIPEPTPEPTPEPTSEPTSEPTPEPTKAPTPVPAQVPTPVPSPVHTKAPTPVPAAVPTKVPTPVPAPVPTKAPTPVLNPDPTPVAKPVTPPAPTAKPTLAPQPAPRLGPRPAPTLAPKPAPIVARKPTINQKDVTPILINKTTPPKVLREKGQVPEIKTPVLISLPTKEQTPLAKRITRAHTGAVTAKILSIKIKEPPKVEGKRRYSKETLLGQEEPLSAVISTKAVAKRRRSKETVPGEQEQFTALIPTKVVGKRRTSKETLPGEQEQFCTLIPTKVVGKRRRSKETVPGEQEQLAALISTKVVGKRRSSKEVVPGEQEQFTALVSTKVAGKRRRSKETVPGEQEQFNAPIPTKVLGKRRRSKETVSGGQEQISAQIPTKVVQKRRSSKEAVSGEQEQFSELIRDILEDGDAPPDAKFEEAAATVRELDTPEEDGQVELQEVVIEEQVDLEDQVEIVEQVELEEQVELDEPDNNEEVEFLVEEAEGSTESGVSHFKVSKKRKRETSQSQNDTQSDDDEVKVEPFNFVLIKESDNIGDLYDYLETVVKTCFESLTFDWATVCRHCTLKSTKYEALLKHMMKRHKLPDELYKCPIDGCNAEVQGDKALAMHLVVLHAPVADIPIYGSCPECQMTFSNILQYNKHSCAHVIKKRRGVRLYCEMCGIEFPSWKRFNFHNQFHLERHRPRACFVCSYTDTNIDELFQHLHYAHEPEGTLFCDVCDRNFRDTAVFTEHSKSHNNVSTTVFNCTECKATFDSRGRLNSHMRSTHSTVISCELCSREFATEATYNMHMKKHLIIEREVHVCSTCGMLSDSQEKMSVHVDIEDGPCFGNEVYVELLRDAYVCDFCSSYFKTKADLRAHRDSDTHKDGIYWCQPCNKDFPDMKLYRHHMRNFQQLRSDMAHRKLEICLYYMCDHEGCSEAYINWNSLYTHKRRQHTLAPRLDGQSKDAQWVCQFCQKKCRSKMSLSVHVARSHNNNNVVCYLCKSSYKDEHSLKKHHEYWHVPMECELCLKLVKNRRNLDTHMNVVHSNNKRYKCDICEKGFYHKSEMVAHRWLHSQSFNCDQCSFTTRNKKSLSVHVLGQHFKRFAYECKSCNKSFGRRQGLTNHIKRLHGSKLTCRDLFDGGCSKSFGSAMQLNVHVRKVHNSTIHLSDISKIDDDFSADDVPSTSKKRCIRIGEDTQIEFINEEAEDDPNELDSDDLKNLEEIKLHSQPATKKERDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -