Htri009202.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010000855.1:1109362-1112310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.043 3.6 8.5 0.9 1 23 194 217 194 217 0.96 2 12 7.5e-05 0.0063 17.2 4.3 1 23 222 245 222 245 0.95 3 12 0.00057 0.048 14.4 4.6 1 23 250 272 250 272 0.98 4 12 0.0054 0.45 11.4 2.8 2 23 279 302 278 302 0.95 5 12 0.00067 0.056 14.2 1.0 3 23 312 333 311 333 0.94 6 12 0.0092 0.77 10.6 0.1 1 23 339 362 339 362 0.96 7 12 1 86 4.2 0.2 5 23 378 397 373 397 0.85 8 12 0.00012 0.01 16.5 0.3 2 23 427 448 426 448 0.97 9 12 4.1e-06 0.00035 21.2 4.7 1 23 454 476 454 476 0.97 10 12 9.1e-05 0.0076 16.9 0.2 2 23 483 504 483 504 0.97 11 12 0.00035 0.029 15.1 0.6 1 23 511 533 511 533 0.99 12 12 0.00019 0.016 16.0 2.7 1 23 539 562 539 562 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACTTGTGCAAAATGTGATTTCGAAAATGGGAACAATAACTATTGGATGGACCTGTTCCACCCGACTCGTTGGCAGAGTGAAATGGCACAAATACGCTTGGAGTTTATCAACTGGAAGTTGCAGatATCACAAAATGATGGAATGCCACAGAAAATATGCAAGACGGGAACAGAAATAAGAACGGAGGCCGGAACAGAAACGGGAGCAGAAACGGGAACAGAAACGGAAACAGAAACGGAAACAGAAACGGTAACGGAAATGGGAACACAATTCGAAACTGAATTGCGAACACCAATAGAAATATCAGCACCGACTACTGTTGAAAGGACCACTGCCATTGTTGAGGGCTCACCATCTTCAAAGTCCATAAAAATATACGTACAAGCAATTAATCCAAACGAATCAGAATCTGTACATATAGAGAACGATAAAATTGTTACCCCAGATAACAATTCATTGAACATCAGGTATGCGTGTCAATTTTGCTACAAACCACAGGAAAACTATACTCTGCAGCACGCGCTGCTCGAGCATATAAGTAACGCACACGATCCTGACCAGCCATACAATTGTCCAGAGTGTACAGACTGTTTTCAAGATGCCGCATCGCGAACtgtgcatataaaaaatactcaTGTGGTTAAACTCTATGCTTGTGACTCCTGCGGTAAAAAGTATACAGATCGTCATAATCTTCGGCATCATGTCGAAAAATATCACTCTGAAATGGATTTTGAGTGCGGGACGTGTGAGAAGCGTTTCTTTACGCGCAAAAGCCTACACTACCACATGAAATGGCACAATCCAGAGCGCCAGCTAAGATGTAAACACAATGGATGCGACAGGCTTTTCATCAATCAACGGCATCTTACAATTCACGAAGCAACACACACCAAAGTTGCCCGGACTAGTGAATATTGTGCATTTTGTGGCAAAGCTTTCATTCATGTAAAAACCTTGCGTTGGCACATCTATCGGCAACATGGCGGTGAGAAGCCTTTCAAATGCCCAATCTGCACAGATGTTTTTGTCTCGTATGCTGAAAAACGCATCCACATGCTTCAGGTGCACACGGAAAATCTAACTCATCAAGAACGTACCGAATGCATGTTCCAGTCCTGTCGCCAGGATTTTGAAAGCGAACAGGAGCTAATCCAACATATGACCGACGATCATCTTAATCTTAACCCAGCAGCACCAATCATTTCAAATAACAAACGAGTACTCCAACGGAAAGGGGAACGACAATATACGGGTCCCATTCAGTGCGAAACTTGTTCACAACGATTCAATATGAAGTCAGCTCTAGATCGTCACATGGCTGTACACTCGGCTGACCGTTTGCATCCCTGTACGCACTGTTCCAAGCGCTATAAGCGTCCACAGGATTTGAATTGGCATATGAAGACGCATACAAGTGAGAAATCCAATGTTTGCGATGTGTGTGGCAAGGCATTCGCcttaaaatatgtattgaCACAGCATAAGCGTAGTCATGAGATTCTTGAGAAGAATTTCAAGTGTGAGATATGTGGACGTGCTTATCTCTTTGAGAAGTCCCTTCGTATGCATCAACGCGTCCACACAGGCAATACGTACTACGAATGCGATCTGTGTCGGAAGCGTTTTGTGACCCACATAAAGTTAAAAAcGCACATAAAGAATGAACACGATAGAAATGAGCCACATGTCAAGGATTCGCTCGTTGAGTTGGTTAACATTGTGATTTCTTAA
- Protein Sequence
- METCRTCAKCDFENGNNNYWMDLFHPTRWQSEMAQIRLEFINWKLQISQNDGMPQKICKTGTEIRTEAGTETGAETGTETETETETETVTEMGTQFETELRTPIEISAPTTVERTTAIVEGSPSSKSIKIYVQAINPNESESVHIENDKIVTPDNNSLNIRYACQFCYKPQENYTLQHALLEHISNAHDPDQPYNCPECTDCFQDAASRTVHIKNTHVVKLYACDSCGKKYTDRHNLRHHVEKYHSEMDFECGTCEKRFFTRKSLHYHMKWHNPERQLRCKHNGCDRLFINQRHLTIHEATHTKVARTSEYCAFCGKAFIHVKTLRWHIYRQHGGEKPFKCPICTDVFVSYAEKRIHMLQVHTENLTHQERTECMFQSCRQDFESEQELIQHMTDDHLNLNPAAPIISNNKRVLQRKGERQYTGPIQCETCSQRFNMKSALDRHMAVHSADRLHPCTHCSKRYKRPQDLNWHMKTHTSEKSNVCDVCGKAFALKYVLTQHKRSHEILEKNFKCEICGRAYLFEKSLRMHQRVHTGNTYYECDLCRKRFVTHIKLKTHIKNEHDRNEPHVKDSLVELVNIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -