Htri012094.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- salm
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010000868.1:4113941-4121641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.3e-06 0.00019 22.0 1.7 1 23 342 364 342 364 0.98 2 8 3.2e-05 0.0027 18.4 3.5 1 23 370 392 370 392 0.98 3 8 2.2 1.8e+02 3.1 2.5 5 23 614 632 611 632 0.84 4 8 3.3e-08 2.8e-06 27.8 0.2 1 23 638 660 638 660 0.98 5 8 0.00099 0.083 13.7 0.9 1 23 670 692 670 692 0.98 6 8 0.085 7.2 7.6 0.1 2 23 887 909 887 909 0.96 7 8 1.1e-05 0.0009 19.9 5.0 1 23 1043 1065 1043 1065 0.96 8 8 8.6e-08 7.2e-06 26.5 0.7 1 23 1071 1093 1071 1093 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCTATATTTCGCAACCGTATCAATTACAGGGGCACAGGGACGCGCAGTGGCTCCGCCAATGGCACACCACCGGGCACAGCAGCAACCGAGGACAGGGAGAGTCTGCTGGCCAAGGAGCTTAACGCGgacagcaataacaatggcAGCGCAGCGGATGAGACGCCAGAGCTGGAGTCAGAGacggagctgcagctggagtcGGGCAGCAGCGAGCAGCCGGAGAACAGCAATGAGGCGCTGGACTTGTCGGTAATCTCCGGCAGCCGATTACCCACAACCGGCCACGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTTGCGGCCACTGCGCTGGCGGGAGCAGCCGATCCGACAGACCTGGCCATGGTGCAGTCGACGATATTCAATGTGCAGCGCCAGCATCTGATGCAGTTGCAGCTCATCCAACACCTACAGAGTCAATTGAAGCGAGCAGGTGGCGTGGTAGCTGCGCTCAGCAGGCAGGGTCAAAATGCATCCGATCCCGACGAGGACGAAGTGGAGGAGGAAGTGCAACTGGAAggggaaatggaaatggaagcaCAGCCAAATCCTGCCAAAGAACAGACGCGAGTGAATGGCGAGGAAGCAACCAGCGAACACAAGAGGCTGGAGGAGAGTTCAAAGACTGATGGACACCAAAAGTCCATGAATACGGAGGCAAAAGGGAACGAGTGCAACAGGGAACAGGATCGAGCTTTGGCcaagaagcagaaggagattcaagctgaagccgaagccgaaCATGAAGCGGAGAATGAATACCAACCGATGTGCGACATCAGCTCCAGTCTGGCATCGAGCATCATCACCAACCATGATCCCCCGCCGGCGCCCAATGAACCCAACTGCCTGGAAATGCTCCAGCGTCGTACGGAGGAGGTGCTCGACTCGGCCTCACAGAGCTTACACGCCGCTCAAATGCAGGAGGAGTACTCTGAGTACGCGTCCAAGGAAGCACAGAGTCGCGGGGAGATCTTCAAGCATCGTTGCAAGTACTGTGGCAAGATCTTCGGCAGCTACTCGGCCCTCCAGATCCATCTGCGCTCTCACACCGGCGAGAGACCCTTCCACTGCAACGTCTGTGGCAGCAAGTTTACCACCAAGGGCAATCTTAAAGTGCACTATCAACGCCATACACAGATATTTCCGCCCATGCTCCTGCCACCTGTGGTCAACGGAGGGCCAAATCCCGGAGCTGGCGACCAGTTCGGCGCTCTGGCACCTATTCGTCTGCCCTTTGTGCCTCCTGCGCCGTTGGCACCGCCACCGCCATCGATCGCAGGCCAATCCCTCAGAGTTCAGTCGGCGTTCGAGGAGCAACAGGAGGCACCATCAATGGCTATGCCACTACCGGAACAAGCACAGCAGGCTGAAGATCTGAACGCCCAAATCCCAGCCAGAAATAAAAGAAGCCACAGTCTGCCAGAGCCTGTTCTTCTGCTCGAGAAACAGGAGGTGGACAAGCCCAAAGACAGTCCCAAGCCGGCAACCCCCACAGCGCCATCCCGTCGCAATGGCAACGTGCGCAAGCGCCAGACGAGCAATGCGGGCAGTCCGCCTAGGGAGGAACTGCTCCGGGATCATCCCGAGCATCTGCACAAGCTGGTGCGTCGTTCTTCTGCGAGTCGCGATGCGAATGTGGCACTGCCAGGAGAGTATTCCTTGGCGCAGATGGAGCGCATCATCGACAAGTCCTGGGAGGATCTCATTGAGATCGATAAGACCTCCGAGACGTCAAAGCTCCAGCAGCTGGTGGACAACATCGAGAACAAGCTGACCGATCCCAATCAGTGCATATTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCTCTCCAAATGCACATTCGCACCCACACCGGAGAGCGACCCTTCCGCTGCAAGATCTGTGGACGTGCTTTCGCCACCAAGGGCAACCTGAAGGCCCACATGagcatacacaaaataaagcCACCCATGCGCAGTCAGTTCAAGTGTCCGGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGTATCCACACCATGGACGATGGCAGTGGTGGCCAAGGGCAGGGTCAGAGCGTTGGTTCTTCGGATGTGGAGCGCTTCGCTGTGGAAGATCAGAACTCGAATAAGTCGCTGGGCACCTCGGATACCTTGGACTTCTCTACGACCATTTCGGATCACTCGGGACAGCGCTCAGAGTCCTCGCAAGGAGGAGATTTCGATGAGTTCATGACCATGGACAGCACTGACGATTCGCGCGACAATTCGAGTGCTGCCACGGCTACACCTCtcgacagagacagagacagggatagagagagggacagaCGATCCGCCCATGACTGCTGCGACGAGCGCTCCAGATCCGATCTGGATGGCGGTGCTCGGGACAGCCTCAACGGGGAGACCCCTGCCATGGATCTCTCATCACCATCGTCAGTCTCGCCGGCGtcagctgcagcggcggcgCGTCTCTTCGGTTATGCCAATGCCCCCAAATCTGCTGCTGATGGCAGCGGCACGCGAGGAATGCACGCGCTGGGCCAGGCGCATGCCAAGTTTCCGCTGCTGCCCTTCGGACCGCTCGGATTTATGGGACTGCAACCGCCCCCAAATGTGTGCAACTTGTGCTTTAAGATGCTGCCCAGCCTGGCTGCCTTGGACAATCATCTACAGACCGAACATGCCAAAGAAGTCTCCGTTTCGTCCAGCCGAAGCCACTGCAACGATGCGGTTTCACCCTACGGCGCAAAGCTCACTCTGAATCCAAATCTGTTCGCCAAAAAACCGAAGGCATCACAGGAGCTGGCGCCTGCAGAGTCAGTCGCGCCATCGGCGGCATCTATCAAAGAGGAGCCCGAGTCCGAGCAGCTGTCAGCCGAGGAGCTTGGCTGCGAGGGTTCCACTGTTACAGCTGGTGCCGCCAGCAGCTATCAGCAGGAGTCCGCCGCGGATGCGGAGCAGTCACTGATGAAGATGCAGCTGCATGCACATCGCTTTCCAGCTAGCCCGCTGGACTTCCAGCAGGCTCTGATGTCTGCGGGGCCACCCACCTCCAGCCTTGATCCGCCGGTAAACAACAAGCATTTCTGCCATGTCTGTCGACGcaacttcagctccagctctgcGCTGCAGATCCACATGCGCACCCACACCGGGGATAAGCCCTTCCAGTGCAATGTCTGCCAAAAGGCCTTTACCACCAAGGGAAACCTCAAGGTGCATATGGGCACGCACATGTGGACGAATCCCACTTCGCGTCGTGGTCGTCGCATGTCCTTGGAACTGCCCATGCGGCCTGGACCTGTCCCGGCTGCCGCACATGGAGCGCCCACTGCCGAGCAGGAGTTCATGCAACGCCGACCGGAACTCTTCTTTCCGTACTTGCCGCCGTTCTTCAACGGAATGCCACCCAAGCCCGGCGAGCTGAGCCCTGGCGCCTTTGCCAACTTACCTCCATCACATTTTGCAAACGGCGGAGCCAAGTATCCGTATCCGCCTGGGCTGCTGGGCTTTCCGGGCTTCCTGGGTGGCAGCGGTGCTCAGAACCCCCATTCGTATGCCATGGAGCAGCGAAGCAACAGCAAGTCGCCGACTTCGGAACAGGCGCAGAGTCCTTCCTCGCGGGAGGATGATGGATCTATGGGCAACACCATCTGGCATCCCTTGAGCAGAATCAAGACAGAGAACAATCAAAACGAGTGCACTGGCAATCAGAgtgagcaggagcaggacgaCAACGGAGAGGTCGATGCAGAAGCTGATCCCGAAGCAGATGCCGACGAGTCGGAGTCTCGGGATGCTTAG
- Protein Sequence
- MCSIFRNRINYRGTGTRSGSANGTPPGTAATEDRESLLAKELNADSNNNGSAADETPELESETELQLESGSSEQPENSNEALDLSVISGSRLPTTGHVALEALQHTKVAVAQFAATALAGAADPTDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQNASDPDEDEVEEEVQLEGEMEMEAQPNPAKEQTRVNGEEATSEHKRLEESSKTDGHQKSMNTEAKGNECNREQDRALAKKQKEIQAEAEAEHEAENEYQPMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPVVNGGPNPGAGDQFGALAPIRLPFVPPAPLAPPPPSIAGQSLRVQSAFEEQQEAPSMAMPLPEQAQQAEDLNAQIPARNKRSHSLPEPVLLLEKQEVDKPKDSPKPATPTAPSRRNGNVRKRQTSNAGSPPREELLRDHPEHLHKLVRRSSASRDANVALPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGQGQSVGSSDVERFAVEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPLDRDRDRDRERDRRSAHDCCDERSRSDLDGGARDSLNGETPAMDLSSPSSVSPASAAAAARLFGYANAPKSAADGSGTRGMHALGQAHAKFPLLPFGPLGFMGLQPPPNVCNLCFKMLPSLAALDNHLQTEHAKEVSVSSSRSHCNDAVSPYGAKLTLNPNLFAKKPKASQELAPAESVAPSAASIKEEPESEQLSAEELGCEGSTVTAGAASSYQQESAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPVPAAAHGAPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANLPPSHFANGGAKYPYPPGLLGFPGFLGGSGAQNPHSYAMEQRSNSKSPTSEQAQSPSSREDDGSMGNTIWHPLSRIKTENNQNECTGNQSEQEQDDNGEVDAEADPEADADESESRDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -