Htri013366.1
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- -
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010001024.1:2788248-2791323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.27 22 6.0 0.1 2 23 114 136 113 136 0.95 2 13 0.043 3.6 8.5 1.1 2 23 143 165 142 165 0.90 3 13 3.7e-06 0.00031 21.3 2.9 2 23 180 202 179 202 0.96 4 13 0.011 0.94 10.4 9.1 2 23 478 499 478 499 0.97 5 13 2.4e-06 0.0002 21.9 2.5 1 23 505 528 505 528 0.95 6 13 6.6e-05 0.0055 17.4 0.9 1 23 533 556 533 556 0.96 7 13 6.3e-05 0.0053 17.4 5.5 1 23 574 596 574 596 0.96 8 13 0.00013 0.011 16.5 1.6 1 23 601 623 601 623 0.98 9 13 3.3e-05 0.0028 18.3 1.7 1 23 629 651 629 651 0.95 10 13 2.4e-05 0.002 18.8 0.7 1 23 657 679 657 679 0.98 11 13 3.5e-07 2.9e-05 24.6 2.7 3 23 687 707 686 707 0.99 12 13 2.3e-08 2e-06 28.2 1.0 1 23 713 735 713 735 0.99 13 13 1.6 1.3e+02 3.6 5.2 1 19 740 758 740 763 0.88
Sequence Information
- Coding Sequence
- ATGCCTGATACTTGTAGCGAATTTGATGCAGAACGCGTCTGTCGCGTTTGCCTGCGCGAAGTGGGCGACTTCTACTTCATCTACGATGAGGCGCCCGTGGAACAAGGTGCGAACATCGCCCAGATACTGAACGAATGTACTCGCTATACCTGTGAGCGATATGACAAAATGCCGCATCACATGTGCGACACCTGCATAAAAGCTGCCTGTCAGGCGTATCGTTTCAAACAGGATGCAGAGAAAGCCTATCGTTCCCTGGTGTCTATGCTGGGTCGCACACCCGTAACTAAGCCAAACAGCAGCGATGTGTGCACCCAGACCGACCAGCTACCCATGCTTCCATGCGGCATCTGCAATGAACAATTCCTCAACATAGTTGAGCTGCGCATGCATCGGAATAGACAGCACAAGCAAGTAGAGGAGCTAAAGTGCAGGCTGTGTGATGCACAATTCCAACATCTGCGCCAGCTGCGTAACCATCTTGTAGAGGAGCACAACGAAGAACAGTCGGGCTCACCATTACTCGGCAGACGTCTGGAGTGTCGTGTTTGCCAACGCACCTTCTCACGACGTGATCATATGTTGCGCCATATGCGAACTGTCCacaaaatagataaattaGGTGGCCGGCGCCGGACGCTGGTTGAAGAACAAGAAGGAAATTCTGATACATCCGCCTGGCCAGGTATTGATGAGGCAACCATGCACAGTGGCGATGAATTGGAGTCAGCCGCCGTTTTACTCAACCTTAATGTCTGCTCCGATGATGACGACAACGATAATACTGAGAGTGGCTATCAATGCCATACCAATCCGATATCAAGCAACGAAGAACCCGACGATGAAGACGCTGATGCCGAGGCTAAAGAATCTCTCTGGCTTCACATTAAACCTGAACCAGAACCCGAATTGGGTCATAGCCCGGAAGCCACTGTGACTCAAGTAAAACGCGAGAAACGCGGAAAAAAATCTAAGCTGGAAACTGCGGCGTACACTGACTCAGAGGAAGATTATGACAGCGAGGATAATCAAACAACTGTGGCCGCTGCACTGGTCACAACAGAAGTTAAAGAGGAACCACTGTCCATCGGCGGTGAACAATTGATTATTAAGGAAGAGCGACAGAACACTGATAGCGTCACTAATAATGAAGAGGATGATTTCGAGATGAATACACCAGCAGTGGACGTCTTGTACAGCACGGATGATGACGAAGAGGACGAGGAGTTTGGCAATGAAGAAAGCGATTTTGATGACAATGATGAATATGACGGCGATCTAGATGCAAGTGCAGAAACAGAGGAAAAGCCTAATCTAGCACAGGGTGGTCAAGTGCAAATTGTGCGTGAGTATCTACAGAAGCCGTCGACTGGCAAACAGCGCCGTAGTCGTCGCACTAAACAAAGTGATATGGAGCCCAATCCGGAGAATCGCTGCGATGTTTGTCAACGCACCTTTTCCCGGCATTGCCACTTGTTGCGGCACAAACTATCGCATCTGGAAAAGAAGCCGCACAATTGCCCGCATTGTCCCAAAGCATTTGCACGCAGCGACCATTTGAAGGCGCACGTACTGAGCCTGCACGGGAACAAGGAGCACAAGTGCGTACTGTGTGATGCGGCCTTCACCCGTTCAGATGCCCTTGAACGACACAAAATGAGCAAGCACAATGGCGAGGGCCTAGACGCAACCAGCGAGCTTAAGTTGCAAATGAGTGAGCACACGTGCGAATACTGCTCCAAACGATTCTCCAGCAAGACGTACCTACGCAAGCATACGCTTCTCCACACAGAGTTCCTCTATGCTTGCAAGAGCTGCGACGAAACATTCAAGGAGCGCCAGCAGCTGCGCAGTCACGAAAAGACCCACACCGGTCAGCGCAACTTCCTTTGCTGCATTTGCGGCGACAGTTTTGCTCGCAATGATTATCTGCGGGTTCACATGCGGCGCCACAATGGCGAGAAGCCGTACAAGTGCCGTTACTGCGTCAAGGCTTTTCCACGCGCCACAGATCTTAAGGTACATGAACGgtATCACACCGGCACAAAGCCTAATCTGTGTAATACGTGCGGTAAGAGTTTCCATCGCGCCTACAATCTGACCATACACATGCGCACCCATACGGGAGAACGTCCCTATAAGTGTGATCAATGCCCTAAAAGCTTCAGCCAGAGCAATGATTTGAAGGCTCATATCAGACGGCACACCGGTGAGCGCTACAAGTGCCCACATTGTGATGCATACTTCTTGCAGCTGTACCATATGCGCAATCATTGCCTCAGTGCTCATAACAAGCATATTGAAACGAAAACGGGACGGTTACAACGCACCGGATTGTTAGATGAGTCAAATCACTCGCATCTGACGACTGTGGTAATGCCACCGGCACGATTTCAACAGTCCACGTCCGATCCGCAAATGATTGCGACCGCAACAGCACAGCTGCCGGTTTCATCGGGGGCGCCAGCGACAATTGCAACGCCAGTTATTCACTCACCGGTGACGTACAATACATCGTCGCCGATACCAGTACCGGTTCCTGCGCCAGATGGCTCTGGATTTGGGGGATCTGCTAGCAATTCAGCATCTACTGCGACAGCGCCGTTTGGCGCATATATAACCCCCGTTGTAATGGCTCATCTCATGTACAACCATGGCGGCAATAGCCAGCAcagcaacgccagcagcagcgagaCGGGAAAATAA
- Protein Sequence
- MPDTCSEFDAERVCRVCLREVGDFYFIYDEAPVEQGANIAQILNECTRYTCERYDKMPHHMCDTCIKAACQAYRFKQDAEKAYRSLVSMLGRTPVTKPNSSDVCTQTDQLPMLPCGICNEQFLNIVELRMHRNRQHKQVEELKCRLCDAQFQHLRQLRNHLVEEHNEEQSGSPLLGRRLECRVCQRTFSRRDHMLRHMRTVHKIDKLGGRRRTLVEEQEGNSDTSAWPGIDEATMHSGDELESAAVLLNLNVCSDDDDNDNTESGYQCHTNPISSNEEPDDEDADAEAKESLWLHIKPEPEPELGHSPEATVTQVKREKRGKKSKLETAAYTDSEEDYDSEDNQTTVAAALVTTEVKEEPLSIGGEQLIIKEERQNTDSVTNNEEDDFEMNTPAVDVLYSTDDDEEDEEFGNEESDFDDNDEYDGDLDASAETEEKPNLAQGGQVQIVREYLQKPSTGKQRRSRRTKQSDMEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVLSLHGNKEHKCVLCDAAFTRSDALERHKMSKHNGEGLDATSELKLQMSEHTCEYCSKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFSQSNDLKAHIRRHTGERYKCPHCDAYFLQLYHMRNHCLSAHNKHIETKTGRLQRTGLLDESNHSHLTTVVMPPARFQQSTSDPQMIATATAQLPVSSGAPATIATPVIHSPVTYNTSSPIPVPVPAPDGSGFGGSASNSASTATAPFGAYITPVVMAHLMYNHGGNSQHSNASSSETGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570373;
- 90% Identity
- -
- 80% Identity
- -