Htri012671.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila trivittata
Gene Symbol
su(Hw)
Assembly
GCA_035045065.1
Location
JAWNNK010000871.1:3070573-3073565[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00063 0.053 14.3 2.2 1 20 201 220 201 222 0.94
2 12 2.6e-06 0.00022 21.8 0.4 3 23 273 294 271 294 0.93
3 12 0.0089 0.74 10.7 0.1 1 23 300 322 300 322 0.97
4 12 7.1e-07 5.9e-05 23.6 2.5 1 21 329 349 329 350 0.95
5 12 3.1e-06 0.00026 21.6 0.6 2 23 362 383 361 383 0.96
6 12 9.8e-05 0.0082 16.8 5.3 1 23 394 416 394 416 0.99
7 12 0.00027 0.022 15.5 0.8 1 23 422 444 422 444 0.97
8 12 1.5e-05 0.0013 19.4 0.8 1 23 450 472 450 472 0.99
9 12 1.9e-06 0.00016 22.2 3.1 1 23 478 500 478 500 0.98
10 12 0.00032 0.027 15.2 2.3 1 23 504 526 504 526 0.95
11 12 0.00012 0.01 16.5 0.8 1 21 534 554 534 558 0.91
12 12 8.5e-05 0.0071 17.0 0.3 3 23 578 599 576 599 0.96

Sequence Information

Coding Sequence
ATGTCTAACGCCACATTGTCCAGCTCTAATGACGCCACTGTGGTTAAAATTGTGCAGGCAGAGAAATTTACATCATCCAAGGAAAAACGACCTGGCACACGCATGAAGCTACTGAACGACGTTACACCAAAGGCCAAGCAAGAAAAGCGCACAAGTATTAAAATAGTCCACAACGATGAAGTCGCAAGCAGCCCCAAAGGCAACAGACGCTCCACCGCCAAAGCTGTGAGCCCCGTTGTTAGCACTGTCAAGATATTAAACGAAAAGCGCAGATCGTCCGGAGGTACACCAATAGAAACTGCTAAAATTAAGACGTCAcccaacaagaagaagaaaatggATCACTACGTGATGCAGGCCATCAAGAGCGAGAACAGTAAGTCAGACAACACGTCTATTGTGGAGGTTGACGACGAGGATACTATCGATTTTATACTCGCTGAGAATGATGACCTCGAAGTCGAAGTAGCCAAGGAGAATGACGATGAGTTTGTTGTATCTGGCGTTGACgaagatgatgacgacgacgatgagggTCTGGGAGAAAGCAGTGCGAACCGCACTAGTGCAACCAATAACGACATCAAAGAAATGGTGGAACATGTATGCGGCAAGTGCTATAAAACATTCCGACGCGTCAAAAGTCTGAAGAAACACTTGGAATTTTGTCGGTACGACAGCGGCTATCATCTTCGCAAAGCAGACATGCTTAAGAATCTGGAGAAGATTGAAAAAGATGCAGTGGTCATGGAGAAGAAAGATATATGCTTCTGCTGCAGCGAGAGCTATGACACTTTCcatCTGGGCCACATCAACTGTCCCGATTGCCCAAAGTCTTTTAAAACACAGACCAGCTACGAGCGTCACATTTTTATCACTCACTCTGAGTTCAATGATTATCCGTGCTCTATTTGTAATGCAAAACTACGCAGCGCTGCATTGCTGAAGCTGcatgagcagcagcaccaggtCCGTGGCAAGCCATTCGCATGCAAGATCTGTGGTAAGGACTTCACTCGGTCATACCATTTGAAGCGGCACCAGAAGTATTCGTCGTGCTCAGCAAATGAGAATGATACTATGAGCTGCAAGGTGTGCGATCGTGTCTTCTATCGCCTGGACAATTTACGCGCTCATCTGAAGCAGCATTTGGGCACACAAGTGGTGAAGAAGCCAGAGTATATGTGCCATGTATGCAAAAACTGCTTCTACAGTCTTTCCACTCTCAATATACACATACGCACCCACACTGGTGAAAAGCCTTTCGATTGCGATCTGTGTGAGAAAAAGTTTTCCGCCTTGGTGGCGCTCAAGAAGCATCGACGTTATCATACTGGCGAGAAACCGTACACCTGCACGGTGTGTAGTCAATCGTTTGCTGTCAAGGAAGTTCTTAATCGCCACATGAAGCGCCACACTGGCGAACGTCCACACAAGTGCACCGAGTGCGGCAAGAGCTTTATTCAGGCCACACAGCTGCGCACGCATTCCAAAACTCATCTCCGTCCCCATGCCTGCACTCTTTGCGAACAAAAATTCAAGACAGAGAAACAACTTGAGCGTCATGTTAAGGAGCACACACGCCAGAAGCGACCCACCTTCGCCTGCACAAAGTGCCCAAGAAGCTTCCGTTCATGCGTACTGCTTAAGGAACATATGGAGGCTGGCGATCATTCGCCTGTAAAGCCGACTCGAGCCAAGCGTTCGGTGAAAATGATCGAGCGCACGGACTGCGCCATCTGCGATAAGAACTTTGACAGCACTGAAACCCTGAGGAACCACATACGTAATGTGCATGAATGCGATCCGGATGATATCTTTGGTACTGATCCACCTGCCAAGCGTAAAGCTAAAAAGACTGTGTTGGTGGaggaagagaagagagagaaaaaggaaGATGTAGATGAAGAGGAGGACTTGTCGGAAGCTAACACATCAGCTGGTTCACTTATCTCTAGCAAAACTGATGGCAATGGAGTTGTGGTGCGCGAATTTTTGGTGGATGAAGGTGACGGAAACGCACAGACCATTGTGCTTGAGAATGAAGTATATACAATTCTGCCTTTGGAGGGTGCCGATGCAACTGAAACGGTAGCAACAGAGAGCGTTAAGCCGGAATCTAAAGAAAATAAGGTGGTATCTCCAGTGGCTAGAAAAGAACAGCGTAAATCCTTGGCAGCTAGtttggctgctgccattgcGGATAATCTGGATGAACCGTTAAGCGATGACGATATTAGTGGCGAGGTGCTCTCTGACGAGGATATTAAATTGAAGGAGAATGTGGCCAAGTTAATTGATATGCTGGTGGATCCGCAAACACTCAAGAAATATGGCTGGCCCAACAGCTCCGAAGAGTCAGTGCTCTGCAAGGTCATCGAGAACTGTGGCCACGATCTGGCAAAAGCTGGAGAGACCTATGCCGAGTTAGACTATGGTACTCGCATGCGCGAGTATTGCAAGCTTCTCTTCACAGTTGTTATACACAATGATTCCATAAAGTCGCTTCTGAATAATTTCCCCGTTGACGATGTTATTGAATATGTTCTAGGCGATGAGGATCaggatgaagatgatgatatGGAAAAGGACTTAGACAATAATATAAGCAAAGAGTCCGAGAAATCGGATACAGATACGGATACCAAGCTAGAAGCCGTTGACGACGATTCCTAA
Protein Sequence
MSNATLSSSNDATVVKIVQAEKFTSSKEKRPGTRMKLLNDVTPKAKQEKRTSIKIVHNDEVASSPKGNRRSTAKAVSPVVSTVKILNEKRRSSGGTPIETAKIKTSPNKKKKMDHYVMQAIKSENSKSDNTSIVEVDDEDTIDFILAENDDLEVEVAKENDDEFVVSGVDEDDDDDDEGLGESSANRTSATNNDIKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSAALLKLHEQQHQVRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCEKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCTECGKSFIQATQLRTHSKTHLRPHACTLCEQKFKTEKQLERHVKEHTRQKRPTFACTKCPRSFRSCVLLKEHMEAGDHSPVKPTRAKRSVKMIERTDCAICDKNFDSTETLRNHIRNVHECDPDDIFGTDPPAKRKAKKTVLVEEEKREKKEDVDEEEDLSEANTSAGSLISSKTDGNGVVVREFLVDEGDGNAQTIVLENEVYTILPLEGADATETVATESVKPESKENKVVSPVARKEQRKSLAASLAAAIADNLDEPLSDDDISGEVLSDEDIKLKENVAKLIDMLVDPQTLKKYGWPNSSEESVLCKVIENCGHDLAKAGETYAELDYGTRMREYCKLLFTVVIHNDSIKSLLNNFPVDDVIEYVLGDEDQDEDDDMEKDLDNNISKESEKSDTDTDTKLEAVDDDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01556253;
90% Identity
-
80% Identity
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