Htri018410.2
Basic Information
- Insect
- Hirtodrosophila trivittata
- Gene Symbol
- retn
- Assembly
- GCA_035045065.1
- Location
- JAWNNK010001311.1:17123797-17135622[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-13 4.1e-10 40.2 0.0 2 47 20 65 19 95 0.93 2 2 1 2.8e+03 -0.9 0.3 20 39 246 270 193 287 0.60
Sequence Information
- Coding Sequence
- aTGCTCATCTCAGAGGATCAAATACAGGAGCTCTACGAAATCAACGATGATCCCAAGCGCAAGGAGTTTCTGGATgatttgttttcgtttatGCAAAAGCGAGGCACGCCCATCAATCGGCTGCCTATTATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCCTCGTCGATCATCACCAGTGCTGCCTTCACGCTGCGCACCCAATACATGAAGTATTTGTACCCGTACGAGTGCAGAAGAAGAATCTCAGCACACCGGCCGAGCTGCAGGCGGCCATTGATGGTAACCGTCGCGAAGGACGTCGCTCCAGCTATGGCCAATATGAGGCTATGCACAATCAGATGCCACTGACGCCCATTTCGCGACCACCACTGCCTggtggcatgcaacaaatgtcGCCACTGGCGCTGGTCACACATGCCGCGGCGGCCAACAATCAGCAGGcgcaggcagcggcagccgctgctgcagcgcaTCGCCGACTGATGGGCGGACCGGCGTTTGGCCAGATGCCGAATCTGGTCACACAGGAGATCGAGAATCGCATGATGGAGTATCTGCAGCTCATACAGGCCAAGAAGGAGCAGAACACACCGGTCTTGGGCGCCACACATccccaccagcagcaacagcagcagcaacagtcgcttCACctacaccagcagcaacagcagcagcagcagcaacaacagcagcaacaacgacagcgcTCACAGAGCCCCGAGCTGAGCACGCGCGACGCTTTGAACGCGCAGGTGGCCCTCTGGCACATGTACCACAACAGCAGTCCAACCGGTTCGGCTCACACCTCACCACAGCAACGCGAAGCCTTGAACCTCTCCGACTCGCCGCCGAATCTGAATTTGAGCCACATAAAGCGCGAGCGTGAGCGTGATCCGACGCCGGAACCAGCGGATCATGAGGACACACCGCATCAGCCGCCTCCAGCTAAGCGTGTGGGCAGTGGGCTGATGCCACCTGGTTTTCCCGCAAACTTTTACTTGAATCCACACAATATGgcggctgtggcagctgcgGCAGGCTTCCATCACCAGGCGAACAATAACAGCCATCATCAtctgcaccagcagcagcaacaggatgCTGCATCGGAGGGTGAGCCGGAGGATGAGTACGGCAATGCGGAGCACAATACCACAGGAAACTCGTCATCCATGCATGACGACAGCGAGCCGCAGCAGCTGAATggacatcatcatcaccaccatcatcatcatcatcagaatCATCTGGACAAGTCGGATGACTCAGCCATTGAGAATTCGCCCAGCACTTCCACaacggcatcggcatcgggcGGCCATCGCCACAGCTCGCCGGTGTCCACCAAAAAGAAGCAGAGCGTCAACAGCAAGCAACAGTCGAGCCCCAAGGACACGCAGCACGACAACTGCCCATCCAGCGGCGTCAAGCTGAATCCCCTGGAGACACTCAGCCTTCTGTCCGGCATGCAGTTTCAAGTGGCACGCAATGGGACTGGGACAAACGGCGAGCAGCAGTTGATTGTCAATCTCGAGCTGAATGGCATTAAGTACTCGGGTGTGCTGGTGGCCAATGCAACCAGAGCTGaccaatgcacaaagcaaacagagacagagccaagtgcctcctccgcctccgcctccgaggagcagcagcatgaGGAAGCTACAAGCAATGTGGTCAAGCACGAAAACAGCCAGGAAGTCACCCAGAACGAAGCAATTGACGACGAAGCGGAGCAGCCCATGGATGATATTATTAATGGAGGAAGTGCAAGTGGGATTGCATCAAGTGGGTtaggcagtggcagtgggaGTGGGgctggtattggtattggtattggtgcTGGTATTGGGGGTGGCAATGGAACTGTGGGCGTATCCCTGCTAAAAGATGCTGTGGTCAGTTCGTAA
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDHHQCCLHAAHPIHEVFVPVRVQKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQNTPVLGATHPHQQQQQQQQSLHLHQQQQQQQQQQQQQQRQRSQSPELSTRDALNAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDTPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQANNNSHHHLHQQQQQDAASEGEPEDEYGNAEHNTTGNSSSMHDDSEPQQLNGHHHHHHHHHHQNHLDKSDDSAIENSPSTSTTASASGGHRHSSPVSTKKKQSVNSKQQSSPKDTQHDNCPSSGVKLNPLETLSLLSGMQFQVARNGTGTNGEQQLIVNLELNGIKYSGVLVANATRADQCTKQTETEPSASSASASEEQQHEEATSNVVKHENSQEVTQNEAIDDEAEQPMDDIINGGSASGIASSGLGSGSGSGAGIGIGIGAGIGGGNGTVGVSLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570022;
- 90% Identity
- -
- 80% Identity
- -