Basic Information

Insect: Hirtodrosophila histrioides
Gene Symbol: -
Assembly: GCA_037075165.1
Location: JBAMCL010000444.1:7650084-7654022[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0026 0.17 12.6 0.6 1 23 504 526 504 526 0.98

2 7 0.00044 0.029 15.0 0.6 1 23 534 556 534 556 0.97

3 7 0.00029 0.019 15.6 1.0 1 23 565 587 565 587 0.98

4 7 3.2e-05 0.0022 18.6 0.9 3 23 641 661 639 661 0.97

5 7 0.00015 0.0097 16.5 3.3 1 23 669 693 669 693 0.98

6 7 2.3e-07 1.5e-05 25.4 2.1 1 23 699 721 699 721 0.98

7 7 0.00028 0.019 15.6 0.1 1 23 727 749 727 749 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0026	0.17	12.6	0.6	1	23	504	526	504	526	0.98
2	7	0.00044	0.029	15.0	0.6	1	23	534	556	534	556	0.97
3	7	0.00029	0.019	15.6	1.0	1	23	565	587	565	587	0.98
4	7	3.2e-05	0.0022	18.6	0.9	3	23	641	661	639	661	0.97
5	7	0.00015	0.0097	16.5	3.3	1	23	669	693	669	693	0.98
6	7	2.3e-07	1.5e-05	25.4	2.1	1	23	699	721	699	721	0.98
7	7	0.00028	0.019	15.6	0.1	1	23	727	749	727	749	0.98

Sequence Information

Coding Sequence: ATGAGTGTGCTGGCATATCCACGTACAAATGATGAGGACATTTTTCGTCAGTGCACAAAGGATTGTGGCGTTGTGACGGCCACCGAGGACTTTCAGTATTTTGCATTGCGCTGCATATTCTGCAGCGAGAAGTTTCTCTACTTCGATGCATTCATTGGTCACATGCAGACGGTGCATCTGGAGGATGCACAGCGCCAAATGGATACCACAGGGTCCGCAAACAACATGGATTACGCCATGGGCCTTGGCATGGGACCGCCCATGTCCCTGGCCCTGGCCGAAGCTGGTAATGATAATGATGCCCCACACGGCTATGGCAATGGTGCTGGGCTACATCAGTTTGATGAGATCGAAGACTTGACCGATGCCGACACTGCCCTGCTGGAGCCCCAAATGGTTATTAAACAGGAGCTGCAAGAGCTCGACAGCagcgatgacgacgacgaggacAATCTAGCCGTGCCTGATGACACTGACAATGGCAACGATGTCGAGGACGACAGCGAAGCTATACTGCCCGAAAGCGATGTGCCCACAGCCAGCACAAGGACACGCAAGAAATTGACAGCGCCACCGCCATATCACGCCAGACATGGTGTCTCCAAAATGGATGTTAAGAACGAGCCTTTGGCAGCCGACGGCGATGATTCTATGGAGGATTATGCCGATGGCGAGCACAGCTATATGGATGACAATTCTGGCGAATATCCCgactacaacagcagcacctaTCAAGCCCATGGTAACACCGGTCAGGGCGCCGAAACAGATTTTCTTAGCTATGATGAAATGGTGGAGGAATCGTTGATTGGCCGTGACCGTGAGCTAACTATGCACATCAAGGATCGCAAAATGATACAATTCCTGATACACTCGTACCAGCGCAATCCGTTCCTCTGGGATCACGGTCACGCTCAGTTCCGTGATCGCGTGAAGCGTGCACGCTTCCTCGACTGGATTGTGCTTGAGTTCAAGAATCGTTTCAACATCTCGCTGGCCAAGGATGCCATCACACGCAAATGGGACAACCTGCGTACCGTCTACAAGCGCGAATGCAATCGCATGGCACTCGAGAAAACAAATATCAGCACGTTGTGGTACTTCAAGGAGCTGCACTTTCTCAACGAGGTCTATAGCTACAACTCGAAAATGTCCGATGCCGTTGTTAAGGAAACATCATATAGACGCCGATTTTCAGCCATATGGAACGATACATCCACCGCCAAGCTGCTGGTGATGGTAAAGCGTTATCAGTGCTTTTACAATCGCTTCGACCCGGACTATCGCAGCAAGGAGCGACGAGGCGAGGGACTGCAACAGATGGCCatggagctgcagcagctaaTCGATGTGACAACCATACAGATATCAAAGCGTATTTCGCAGCTGCGCTTTGATTACTCCAAACAGAAGATGGAGCGCCTAAATGCGGATCGCATGGGACGCAAATTTATAcccaattatatatattatgatcAAATGAGCTTCATGGACGATGATATACCGCCATTTAAGTGCCAGCATTGTGGCGAGATTGTGCAAACGTTGCGCGAACTGGATCTACACATGCTGAGCCACCAGCCCAGCCTGGGCGGTGGATATTATTGCAACGTGTGCAATATACAATTCAACAATGCAGAGGAGTTTGAAAATCATAAACAACTGCATTTGGGCGCCGGCAATGAGGTTAAGTACAATTGTGAACTGTGTACGGCCAGTTTTCGTGAGAAATCGAACTACGATGAGCATTTACGTCGCCACAATGATGAGCTATTCCTGCCCACGCTGGCCCTGAATCACAGCATACTCGACAGTGCCGGCGGCGAGACAGATCCTGCCGTCGCGGACACTTCAGCAGCTGGCGGCAGTGGCGGCGACGATGAGGAGATATTTGGAGCGGACGGAGCTAAGCCATTTGGTTGCGAGGTGTGCCATCGTACATTTGCCTCGCCGGGTCATCTCAATGCCCATCGGATTGTGCATCAAGATGAGCGCGAGCGTTGCTATAAATGCGACTATCCGCAGTGCAACAAATCGTTTGTGTCGCGCCACAGCCTCTTCGATCATTTGAAGCAGCATTACAGCAACGAGGAGTTCAAGTGCGACATCTGTGGCAAGAGCTTTAAGTCAACCAAGAATCTACAAAATCACAAGCAAATCCATGATAAAGTCAAGCGCTACGTCTGCCAAATATGCGGCTCGGCATTCGCCCAGGCCGCTGGCCTTTACCTGCACAAGCGTCGTCACAATCGTCCCAATGGCACCACCGGTTCCGTTGGCGGCCGTTCCGGACGCACCACACTGTGA
Protein Sequence: MSVLAYPRTNDEDIFRQCTKDCGVVTATEDFQYFALRCIFCSEKFLYFDAFIGHMQTVHLEDAQRQMDTTGSANNMDYAMGLGMGPPMSLALAEAGNDNDAPHGYGNGAGLHQFDEIEDLTDADTALLEPQMVIKQELQELDSSDDDDEDNLAVPDDTDNGNDVEDDSEAILPESDVPTASTRTRKKLTAPPPYHARHGVSKMDVKNEPLAADGDDSMEDYADGEHSYMDDNSGEYPDYNSSTYQAHGNTGQGAETDFLSYDEMVEESLIGRDRELTMHIKDRKMIQFLIHSYQRNPFLWDHGHAQFRDRVKRARFLDWIVLEFKNRFNISLAKDAITRKWDNLRTVYKRECNRMALEKTNISTLWYFKELHFLNEVYSYNSKMSDAVVKETSYRRRFSAIWNDTSTAKLLVMVKRYQCFYNRFDPDYRSKERRGEGLQQMAMELQQLIDVTTIQISKRISQLRFDYSKQKMERLNADRMGRKFIPNYIYYDQMSFMDDDIPPFKCQHCGEIVQTLRELDLHMLSHQPSLGGGYYCNVCNIQFNNAEEFENHKQLHLGAGNEVKYNCELCTASFREKSNYDEHLRRHNDELFLPTLALNHSILDSAGGETDPAVADTSAAGGSGGDDEEIFGADGAKPFGCEVCHRTFASPGHLNAHRIVHQDERERCYKCDYPQCNKSFVSRHSLFDHLKQHYSNEEFKCDICGKSFKSTKNLQNHKQIHDKVKRYVCQICGSAFAQAAGLYLHKRRHNRPNGTTGSVGGRSGRTTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00535470;
90% Identity: iTF_00803841;
80% Identity: -