Hhis009959.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- RREB1
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000444.1:10232762-10239624[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.042 2.8 8.8 0.8 1 21 259 279 259 281 0.93 2 13 0.00039 0.026 15.2 0.2 1 23 291 313 291 313 0.98 3 13 9.5e-05 0.0063 17.1 7.3 1 23 319 341 319 341 0.98 4 13 0.61 41 5.2 1.7 2 20 567 585 567 587 0.93 5 13 0.01 0.69 10.7 0.1 1 23 725 747 725 747 0.97 6 13 1.4e-05 0.00097 19.7 0.7 1 23 757 779 757 779 0.99 7 13 0.00098 0.065 13.9 2.0 1 23 785 808 785 808 0.97 8 13 0.0035 0.23 12.2 2.0 1 23 1062 1085 1062 1085 0.95 9 13 0.0001 0.0068 17.0 0.3 2 23 1437 1458 1436 1458 0.97 10 13 0.17 11 6.9 6.3 1 23 1464 1487 1464 1487 0.97 11 13 6.4 4.3e+02 1.9 4.0 1 23 1626 1649 1626 1649 0.85 12 13 0.0099 0.66 10.8 0.5 3 23 1709 1729 1707 1729 0.96 13 13 0.0016 0.1 13.3 4.8 1 23 1735 1757 1735 1757 0.99
Sequence Information
- Coding Sequence
- atgctggcagcacagcagcaacacacaacggcaacagtagcagctgctgcggcagcagcaacaacagcagcagcagcagcaacagcagcagcagcaacaacaacagcaacagttgcacaTGGCATGGATCGCCAGCGTCGGGATTCAAGCACCTCAGAGTCCTCGCTGGAGCACCTGGACCTGGGCCGGACACCAAAGaagctgagcagcagcagcggcgctcCGCAGCCGACGTCAACGCCACACgaggcgacggcgacggcaacgacAGCGACGTCGCGCAAGCGTAAGctgcgccagcagcagcagcagcatttgctCTCCGACGAAGATGAGGaggaactgcagcagcagcagcagcagcaacaacaacaacagcagcagcagctggagcagtcCATGCTGTCAGCACAGCGGACGCGTCACAAGCAGCGACGCAGCGCCGCTGCCAGCGCCAGCATCGTAGTCGACTACAGTGCGAGCGGCGACGCCAGCTCGTTGCGTAAAAAGTTTCGACTGAAtcgcagcagcgccagcgccaacgGTGAACTCTCCGAGTCTGGCTTTGTGGATGGCAGCGCTCACAGCGGCTACTTGCTtagcagcagcgctgccaacgCAGCTCAGTCAacgacagcagcggcagcggcagcagcagcagcggtggcagcTGCGCAGCACGCATCAAGCAGCAGCTCGGGCGGCTCCTCGCCCCAGGGCCTGTGCCTCTCCAGCGCCGAGTCCGGCATTGGCGCCGGCGAAGACCACATGAAGTATCTCTGCCCCATCTGCGAGGTCGTCTCGGCCACGCCCCACGAGTTCACCAATCACATCCGTTGCCACAACTACGCCAATGGCGACACCGAGAACTTCACCTGCCGTATCTGCTCCAAGGTGCTGTCGTCGGCCTCCTCGCTGGACAGGCACGTGCTGGTGCACACCGGAGAGCGTCCCTTCAACTGTCGCTACTGCCACCTGACCTTTACCACAAACGGCAACATGCACCGCCATATGCGCACCCACAAGCAGCACCAGACGGCACAGTCGGCGTCGGGTGCggtccagcagcagcagcagcagcagcagcaacatcagcgacgccagcagcaTGCGGCAGGTGCAACTGCCGCTGGAGCCGGCGGAGCGGCAACACAGGCGGCAAGCTATGAGAGCGATGCCAGCTGCTCCACGGATGTGTCCAGTGCGCAgagtcacagcagcagcaaccagtcaaacaacaacaacaacaacaacaacagccacaaaacgaacaacaacaacattgaggaggaggatgaggaggaagaggtgccagcagcagcagcagcagcagcagcagcgactggCAAGCGGCGACGCCTCAAGACgaccatcaacaacaacaacatcatcaacgATGAGCACGACGAGGCGCAGCCGGAACAGGCCCAGGAGCTGGAGGAGGACCtggaggatgatgatgatgatgatgatgatgacgatgtgAACAGCGTGGATGTTGCACAGGTTATAACCAGCACACCGGATGTGGCCACATTGCTCGCATCTGGCGGCACCTCGCCgacgcactcgcactcgcttTCCCGCTCCCAATCGCCGGGACTGCTGCTCAATTGCCCCGCCTGCAATGCGGAGGACTTTGAATCCCTGCCAGCGCTGTGCGCCCACATGGATGCACTGCACGCGGACATACCAGCCAAGTGCCGCGAATGCGAGGTGATCTTTGCCAGCCATCGCCAGCTGCAGGTGCACAGCTGCCGTGCGGCCGGCAATGGGCtgcaGCTTGAGGATGAGgacgatgaggatgaggaggagcagctgcagctgaagctggagcagcCGCGGGAGCAAGAGCAAGCGGAGAGCGAGCGCGATGACTTCTTTCATCAGCTGTATCTGAAGGGCAAATCCTCAGCGGCTGCCAACCATCAGCTACCCTCGCCCATCAAGCACGAGCCAGCGGATCGGCTGGACAATCGTCAGGATCTGGCAGATATACAGAGCATACTGAACAtgaccagctccagctgcacaTCCAGCTTTCTGCGCAACTTTGAGCAATCGGTGAACACGCCATGCTCCAGCCAGTATAGCCTGGATGGGCGCGACGGCGAGGAGGAGGCCCAGGATGCCTTCACCAGCGAATTTCGGCGCATGAAGCTGCGCGGCGAGTTCCCCTGCAAATTGTGCAGCGCCGTCTTTCCCAATCTGCGCGCCCTCAAAGGACACAATCGTGTCCATCTCGCTGCCGTTGGCCCCGCCGGTCCATTCCGTTGCAACATGTGCCCCTATGCCGTCTGCGACAAGGCAGCCCTGGTGCGGCACATGCGCACCCACAATGGAGACCGTCCCTATGAGTGCGCCGTCTGCAACTACGCCTTCACCACGAAGGCCAACTGTGAGCGGCATCTGCGCAATCGCCATGGCAAGACCAGCCGGGAGGAGGTGAAGCGTGCCATTGTCTATCATCCGGCGGAGGATGCCAGCTGCGAGGAGAGCAAGTCATCCCGTTTGCCTGACCAGGAGATGGCCGATCTGAGCTATCGCTCCCTGACACCGCCACCCGCGGAGGCTGCCTCGTCGCAGCTGAAGCACATGTTGCTCGCAGAGCCAACAGTCaaggcacagcagcaacagccgctgAAAATTCAAGTCAAGAGCCTGGATCAGCTGGTGGACAAACCTCTGGCAGCGCCGGCCACGCCAGCAATGGATCTGAGCATGGATGTGCTGGATCTGAGCAAgaagccagcaacagcagctgcccaGGAGCTGCTCGAGCGGGAGCTACAGCGCGAGCGTGAGCAAgaattgctgctgcaacatcagcaacaacagcagcagcaacagcaacaacagcagcagcagctctttGGTGCTGGGGAGGCGGCCACGCAGTACATGCAGCAGCTGTTCCGCAATCTCATGTTCCAGCAGACGCCAGGATTTCCGTTCTTTGGCTTTATGGCGCCACCAACAGCCGCCGAAAAGCCGCCACATGCGAGCACAGCAAGCactgcggcagcaacagcagcagcagcgccgccgATGAGCTTGCCAATGCCGCTGCAGATGCCTGGTGTGGGCGTGCCCGTGCCCGCGGCTGGGCCCGTCAAGATGGTCATCAAGAATGGCGTCCTTATGCCCAAGCAGAAGCAGCGTCGCTATCGCACCGAGCGACCCTTTGCCTGCGAGCATTGCTCGGCACGCTTCACGCTCCGCTCCAACATGGAGCGTCATGTGAAGCAACAGCATCCGCAGTTCTATGCCCAGAGGCAGCGCAGTGGTCACCATGTGATGCGCGGACGTGCTGCCTCCTCCAGTGCGGCAgtagctgctgcagcagcaacggcagcagcggctgccgcagcggcagcagccatGAGCAATCATCATGTGCATCATGCGCCCATCTCGGAGCAGGTGAAGTATGCGATACTGGCACAGCAGCTGAAGGCACGCAAGGATTCAGATTTGCTGCAGCAGGCTCTGGCACATGGCTCCAGCAGCGTGGTGGCCAATCCGTTGCTCCACTTTGGGGGCTACAGCAGCGGCAAGAGCCACACTGGCCACACCAAtaccaccagcaacaacagcaatggtCATGCCATACCCATGGATGATGATGAGCCAAAGCTCATCATAGACGAGGACGATGAGGATGAGTTTGATGATGTCGATGAGGAGGACGAGCTGGATGAGGAGgaagagcagcaggcagagttggagctggagcagcagctggaacAGGTGCACGTGCAAGAGAAGGATCTGCCCAAGCCGCTGCATCAGTTGCCAAGAACATCGACGCCCACGCCACCCATTGAGGTGGCCAAAAAGGTGGCCGAGACCATACTAGAGCAGGCCATCAAGGCGGGCAAGCCAAATGAGCGTGAGTGCGaggtggcgcccgagcagggactggcGGCCGAGCCAAGgctggcgcccgagcagggacttgTAACAAAAACGCCCGCACCGCCACATACAATGAAAACGATGATAGCCCAAGCCGAATCAGTGGCCAAATCGCTTAAAGAGGTGGCCAGCTCGCCATTTAAGGACGAATCTCAGGATCTGGTGCCGGTGGCTAAGCTCGTTGACAATGCCACCAGCAATCAGGTGTCCTTCAACAGCTACTTTCGTCCCAGCGATGTCGCCAATCATATGGAGCAGAGCGACGAGGAGGGACTCGTCGCCTCCGGCTCAGCCAGCGAGAGCAACAACTCCGGCACCGAGGATgtgaccagcagcagctgcaatgaACCAAAAAAGAAATCCGCCTACAGTCTGGCACCAAATCGCGTCAGCTGCCCTTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGAGACGTCACATCCTGACACACACGGGCCAGAAGCCGTTCAAGTGCTCCCATTGCCCGCTGCTCTTCACCACGAAGAGCAACTGCGATCGCCATTTGCTGCGGAAGCATGGCAACGTGGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGATGTCAACGAGCCCATACCAGTGCCCAAGTCTGTCGAAGAGATTGAGCTGGAGGAGCAGCGACGCCGCAAAGCTGCCGAGGCGGAGAAGGAGCGCGAGAGGGAGCGCGAACGCGAGGAGCGGGAAAGGGAGCGCGAAAGGGAGCGCGAGTTGGTAAAGGAGCGTGAGCGTCGCCTGCTCGAGCAGGAGCGtgagcaccagcagcagctcatcgAACGGCTGGCAACCGCACAGCTTCATCAGCAAAtggccgcagcagctgctgctgccgccgccgccgccaatgCCAACGCCTCCgcctccaccaccaccaccaccgcctcGGCCAGCTcccccaacagcagcagcgaggcTAACGGCAGCGATTTGCCCTACAAGTGTCATCTGTGCGAATTCAGCTTCGCCGAGCGGCTGCAGTGCCTCGAGCACATCAAGCAGACGCATGCCCATGAGTTTGCcctgctgctggccaaagGCGCCATCGAAACGGATGCGCTGgtcgagcagcagcaacagttgccgtcagcagctggcgctggcgctggctcCGATGATGAGTCAACGGGCGGTGGCGCCTCCCGTGCCGGCAAATATCCCGATTACAGCAATCGCAAGGTCATCTGCGCGTTCTGTGTGCGCCGCTTCTGGTCCACCGAGGATCTGCGCCGCCACATGCGCACCCACTCTGGGGAGCGGCCCTTTCAGTGCGAGATCTGCCTGCGCAAGTTCACCCTGAAGCACAGCATGCTGCGCCACATGAAGAAGCACAGCGGACGCAGTCACAATGGCGAGCATGGGCAGTCCGACTGCTCCGACGACGAGCAGATGGCCACGCCGCCCAGCACGCCAACGCCCATGCCacaggccaacaacaacaacaacaacaacacttgccacaataacaacaacaacagcaacaataacaacaacagcagcaaacagaGCCTCCGTCTGCTGCTGGACAAGGCGAACGAGTGGCGCGTCAGCCGCCTGGGTGAGCACAAGGAGAACCTCGGCGAGGCGACCCCATCCTCCGCGGCGGCGGTGGCCAGCGGTGATCTAATTGGCAATCTGCTGGGCATCAGCGATCAGGGCATACTCAACAAGCTGCTCTCCTCTGCCGACGAGGCGGCCAAGCTCCTGGGCGTGGACAAgtag
- Protein Sequence
- MLAAQQQHTTATVAAAAAAATTAAAAATAAAATTTATVAHGMDRQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHEATATATTATSRKRKLRQQQQQHLLSDEDEEELQQQQQQQQQQQQQQLEQSMLSAQRTRHKQRRSAAASASIVVDYSASGDASSLRKKFRLNRSSASANGELSESGFVDGSAHSGYLLSSSAANAAQSTTAAAAAAAAAVAAAQHASSSSSGGSSPQGLCLSSAESGIGAGEDHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTAQSASGAVQQQQQQQQQHQRRQQHAAGATAAGAGGAATQAASYESDASCSTDVSSAQSHSSSNQSNNNNNNNNSHKTNNNNIEEEDEEEEVPAAAAAAAAATGKRRRLKTTINNNNIINDEHDEAQPEQAQELEEDLEDDDDDDDDDDVNSVDVAQVITSTPDVATLLASGGTSPTHSHSLSRSQSPGLLLNCPACNAEDFESLPALCAHMDALHADIPAKCRECEVIFASHRQLQVHSCRAAGNGLQLEDEDDEDEEEQLQLKLEQPREQEQAESERDDFFHQLYLKGKSSAAANHQLPSPIKHEPADRLDNRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSLDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCSAVFPNLRALKGHNRVHLAAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCEESKSSRLPDQEMADLSYRSLTPPPAEAASSQLKHMLLAEPTVKAQQQQPLKIQVKSLDQLVDKPLAAPATPAMDLSMDVLDLSKKPATAAAQELLERELQREREQELLLQHQQQQQQQQQQQQQQLFGAGEAATQYMQQLFRNLMFQQTPGFPFFGFMAPPTAAEKPPHASTASTAAATAAAAPPMSLPMPLQMPGVGVPVPAAGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAASSSAAVAAAAATAAAAAAAAAAMSNHHVHHAPISEQVKYAILAQQLKARKDSDLLQQALAHGSSSVVANPLLHFGGYSSGKSHTGHTNTTSNNSNGHAIPMDDDEPKLIIDEDDEDEFDDVDEEDELDEEEEQQAELELEQQLEQVHVQEKDLPKPLHQLPRTSTPTPPIEVAKKVAETILEQAIKAGKPNERECEVAPEQGLAAEPRLAPEQGLVTKTPAPPHTMKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSCNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVNEPIPVPKSVEEIELEEQRRRKAAEAEKEREREREREERERERERERELVKERERRLLEQEREHQQQLIERLATAQLHQQMAAAAAAAAAAANANASASTTTTTASASSPNSSSEANGSDLPYKCHLCEFSFAERLQCLEHIKQTHAHEFALLLAKGAIETDALVEQQQQLPSAAGAGAGSDDESTGGGASRAGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGEHGQSDCSDDEQMATPPSTPTPMPQANNNNNNNTCHNNNNNSNNNNNSSKQSLRLLLDKANEWRVSRLGEHKENLGEATPSSAAAVASGDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -