Basic Information

Insect: Hirtodrosophila histrioides
Gene Symbol: -
Assembly: GCA_037075165.1
Location: JBAMCL010000341.1:699538-704841[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.2 6.2e+02 1.4 5.3 2 23 350 372 349 372 0.92

2 17 0.022 1.5 9.7 1.8 2 23 415 436 415 436 0.93

3 17 6.6 4.4e+02 1.9 3.1 2 17 447 462 446 473 0.76

4 17 7.3 4.9e+02 1.7 0.5 3 23 477 498 476 498 0.92

5 17 0.0024 0.16 12.7 0.3 3 23 506 526 504 526 0.96

6 17 0.0014 0.09 13.5 0.6 1 23 534 557 534 557 0.97

7 17 0.00015 0.01 16.5 0.3 2 23 562 583 561 583 0.97

8 17 6.4e-05 0.0043 17.7 0.6 1 22 631 652 631 655 0.90

9 17 1.7 1.1e+02 3.7 2.2 3 21 662 680 662 681 0.93

10 17 0.013 0.84 10.4 0.6 1 23 700 725 700 725 0.97

11 17 0.1 6.7 7.6 1.8 2 23 741 763 740 763 0.93

12 17 0.064 4.3 8.2 0.8 2 23 769 791 768 791 0.92

13 17 0.00087 0.058 14.1 0.5 2 23 795 817 794 817 0.96

14 17 2.8e-05 0.0018 18.8 1.6 1 23 823 845 823 845 0.97

15 17 0.011 0.74 10.6 0.9 1 23 849 872 849 872 0.93

16 17 0.00013 0.0089 16.7 1.4 1 23 878 901 878 901 0.97

17 17 0.027 1.8 9.4 0.3 5 23 914 933 907 933 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.2	6.2e+02	1.4	5.3	2	23	350	372	349	372	0.92
2	17	0.022	1.5	9.7	1.8	2	23	415	436	415	436	0.93
3	17	6.6	4.4e+02	1.9	3.1	2	17	447	462	446	473	0.76
4	17	7.3	4.9e+02	1.7	0.5	3	23	477	498	476	498	0.92
5	17	0.0024	0.16	12.7	0.3	3	23	506	526	504	526	0.96
6	17	0.0014	0.09	13.5	0.6	1	23	534	557	534	557	0.97
7	17	0.00015	0.01	16.5	0.3	2	23	562	583	561	583	0.97
8	17	6.4e-05	0.0043	17.7	0.6	1	22	631	652	631	655	0.90
9	17	1.7	1.1e+02	3.7	2.2	3	21	662	680	662	681	0.93
10	17	0.013	0.84	10.4	0.6	1	23	700	725	700	725	0.97
11	17	0.1	6.7	7.6	1.8	2	23	741	763	740	763	0.93
12	17	0.064	4.3	8.2	0.8	2	23	769	791	768	791	0.92
13	17	0.00087	0.058	14.1	0.5	2	23	795	817	794	817	0.96
14	17	2.8e-05	0.0018	18.8	1.6	1	23	823	845	823	845	0.97
15	17	0.011	0.74	10.6	0.9	1	23	849	872	849	872	0.93
16	17	0.00013	0.0089	16.7	1.4	1	23	878	901	878	901	0.97
17	17	0.027	1.8	9.4	0.3	5	23	914	933	907	933	0.92

Sequence Information

Coding Sequence: ATGTCGGAGAATTCGAAAATAAGCAACGAATCTGGACCTAGGTGCCTGCATTGCAGAGTGCGCAATTCAAAACAGGGATATCAGGATATATTCGATGAAGTGGGCATTGAAATCGAGCTATCCGCTCTGCTGGCCAAGTATTTCCAGTTAAAAGTCAAACCCGATGCTCAGAAGCCGCAGTTGCTCTGCCAGGAGTGTGTTAATACGCTAATACGCTTCTTTGACATTGATGAGCTCGAAAGGCAGCAGGATGCGGCCAATgcgaacaagaacaagaataCCAAAAAGCCTAAAACTGCACCACCACCAGCTGCGCCCGCGTCTGTTGCCAAAAATGATCCAAAAGCCGACAAAAAACAGACACCGCCGCCGGCAAAGGCTACAGCTCCTGTAAAAGGTGTGACCAAAAAGATAACACTGCCTGTTAAGCCAGTAAAAACTCAAGTGCCTCCAAAGACCACACCAGTTGCTGCTCCAGCAAAAGCCGTCGTACCAGTTGCCATACGCATTGTCAATGCCAAAACTGCAGCCGGCACGCCAAAACGCTTGCCGCCCAAACCAACAGAACCagtcaaagcaaacaaaactcgCAGTCCCAAGGTAAAAGTTAGCCCACGCAAGTCTAAGGAAAATGGTGAGCAGGAGCAAATTAGCGCACTGATACGTGACATATTGAACGATGAGGAGGCGCCGCCAGATGAGAAATTGGTTGAGGCGGCAGCCACAGTGCGCCAGCTGGAGAAGGATGCAGCCAGAGAGACGGAGGAGCAGGTGCTCGAAGAACAGGATAATAATGACGAGCTGGAGTTTGTGCTCGAGCCGGCAGGTGGCTCTGATTCGGATGTACGCCATTTCAAAGTGGGGAAAAGAGCTGCACAGCACGCCTTGCGTTCGCCTAATGAGAGCCAAAGCGAGGACGACTCACTCAAAGTGGAGCCcttcaattttgtattgatCAAGGAAACTGATGACATTGGAGatttatacgagtatttggCAACTGTGGTCAAGACTTGCTTTGAAACATTGATCTTTGAATGGCCCACAGTTTGCCGGCATTGCTCCTTGAAATGTAGTAAATATGAAACTCTGCTGACACACACGGTGCGACGTCATCAGCTGCCGGAGGAGCGCTATGTGTGCCCCATTGAGGGCTGCAATGCCGAGATACAGGGAAACAAATCCTTAGCCATGCATTTGGTTGTGCTGCATGCACCTGTGGCGGAAATACCCATTTATGGCAGCTGTCCCGAATGCAACATGACCTTCTCAAACATACTGCAATACAACAAACATTCCTGCGCACACGTTATAAAGAAGCGTCGCGGCGTTCGCTTATACTGCGAAATGTGCGGCATAGAGTTTCCCTCGTGGAAGCGctttaattttcataatcaatttcatttggaGCGGCACAGGCCGCGCGCCTGCTTTGTGTGCAACTATTCGGACACCAACATTGATGAATTATTTCAGCATTTGCACTACGCACACGAGCCGGAAGGAACGCTCTTCTGTGATATCTGTGATCGCAATTTTCGTGACGCTGCTGTCTTTATGGAGCACACTAAATCGCATGCCAATGTCAGCAGCACCACCTTCAGCTGCAGCGAATGCAGCGCCAACTTTGATACACGCGGCCGTCTCAATGGTCACATGCGTTCCACACATGGCACGGTTATCAGCTGCGAAATGTGCAGCCGCGAGTTTGCCTCGGAGGCCAACTACAACATTCACATGAAGAAGCATTTGATCATCGAGCGCGAGGTGCATGTGTGCGCCAATTGCGGTCTGCTCAGCGAGAATCGTGAAAAGATGGTGGCTCACGTGGAGAGTGAGGATACGGCTTGCTTTGGCGTTGATATTTATGTGGAACTGCTGCGTGATGCCTTCGTTTGTGAATATTGCAACGCGTACTTTAAGAATAAAAGTGATTTACGTGCACATCGCgattcaaatatacataaggATGGTTACTTCTGGTGTCACCCTTGTCGCAAGCAGTTTGCGGACATGAAACTTTATCGTCATCATATTCGAAACTCTCAGCAACAGCGCACGGATGTTGCACATCGCAAACTGGAGATTTGCCTCTATTATATGTGCGATTATGAGGATTGCTTTGAGGCGTACATCAATTGGAATTCGCTGTACACTCACAAGCGACGCACTCACGATTTAGTTGAAAAGCAGGTGCCCAAACCCAAAGAAACCGATTGGATCTGTCAGTTTTGTCGCAAGGAGTGCCGCTCCAAAATGTCACTCTCGGTGCATGTGGCACGCAGTCACAATAACAATAACGTCGTTTGTTTCCTGTGTAAGTCCTCCTATAAGGATGAAGAGGCGCTGAAAAAACATCATGCCTATTGGCATGAGCCCATGGAGTGTAAGGTGTGCTCAAAGGTGGTCAAGAATCGTCGCAATTATGACACACACATGAATGTGGTACACTCGAACAACAAGCGATATGCCTGCAGCGTCTGCAAGAAAGGATTCTATCACAAGAGTGAAATGGAGGCACATCAACGGCTGCATACCCAATCGTATAGCTGCGAGCAATGCAGTTTCACCACCAGGAACAAGAAATCTCTGTCGGTTCATGTGCTGGGACAGCATTACAAGCGTTTTGCCTATGAGTGCAAGCTATGCAATAAACGCTTTGGACGTCGTCAGGGATTATCGAATCATACGAATCGTGTGCATGGCACCAGGCTATTGTGCCAGGACTTCTTTGAAGGAGGCTGCAACAAATCATTTGGCCTAACCAAGAACCTGAGCGCTCATGTCCGCAAGGTGCACAACGGCGACATTTTTCTGAGCGATGACACGGACAgggctgatgatgatgatgaactTGATGGTGATCTTATAAGCAATGATGAAGACGGGCCATCCACATCGAAGAAACGTTGTCGCATCGACGATGATTCACAGATAGAGTTCATTAGCGAGGATGCTGGAGATGAGGATACTGAAACCTATGAGGAGTTTCAAGAGGTCAAGGAGGTGGAGACACAGCCGCGAAAGAAAATACAAAGGAAATGTTAA
Protein Sequence: MSENSKISNESGPRCLHCRVRNSKQGYQDIFDEVGIEIELSALLAKYFQLKVKPDAQKPQLLCQECVNTLIRFFDIDELERQQDAANANKNKNTKKPKTAPPPAAPASVAKNDPKADKKQTPPPAKATAPVKGVTKKITLPVKPVKTQVPPKTTPVAAPAKAVVPVAIRIVNAKTAAGTPKRLPPKPTEPVKANKTRSPKVKVSPRKSKENGEQEQISALIRDILNDEEAPPDEKLVEAAATVRQLEKDAARETEEQVLEEQDNNDELEFVLEPAGGSDSDVRHFKVGKRAAQHALRSPNESQSEDDSLKVEPFNFVLIKETDDIGDLYEYLATVVKTCFETLIFEWPTVCRHCSLKCSKYETLLTHTVRRHQLPEERYVCPIEGCNAEIQGNKSLAMHLVVLHAPVAEIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGVRLYCEMCGIEFPSWKRFNFHNQFHLERHRPRACFVCNYSDTNIDELFQHLHYAHEPEGTLFCDICDRNFRDAAVFMEHTKSHANVSSTTFSCSECSANFDTRGRLNGHMRSTHGTVISCEMCSREFASEANYNIHMKKHLIIEREVHVCANCGLLSENREKMVAHVESEDTACFGVDIYVELLRDAFVCEYCNAYFKNKSDLRAHRDSNIHKDGYFWCHPCRKQFADMKLYRHHIRNSQQQRTDVAHRKLEICLYYMCDYEDCFEAYINWNSLYTHKRRTHDLVEKQVPKPKETDWICQFCRKECRSKMSLSVHVARSHNNNNVVCFLCKSSYKDEEALKKHHAYWHEPMECKVCSKVVKNRRNYDTHMNVVHSNNKRYACSVCKKGFYHKSEMEAHQRLHTQSYSCEQCSFTTRNKKSLSVHVLGQHYKRFAYECKLCNKRFGRRQGLSNHTNRVHGTRLLCQDFFEGGCNKSFGLTKNLSAHVRKVHNGDIFLSDDTDRADDDDELDGDLISNDEDGPSTSKKRCRIDDDSQIEFISEDAGDEDTETYEEFQEVKEVETQPRKKIQRKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00803810;
90% Identity: iTF_00803810;
80% Identity: -