Hhis012546.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- salm
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000561.1:72364-80050[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.9e-06 0.00019 21.9 1.7 1 23 367 389 367 389 0.98 2 8 4e-05 0.0027 18.3 3.5 1 23 395 417 395 417 0.98 3 8 2.8 1.9e+02 3.1 2.5 5 23 659 677 656 677 0.84 4 8 4.2e-08 2.8e-06 27.7 0.2 1 23 683 705 683 705 0.98 5 8 0.0013 0.084 13.6 0.9 1 23 715 737 715 737 0.98 6 8 0.063 4.2 8.2 0.1 2 23 947 969 947 969 0.96 7 8 1.4e-05 0.00091 19.8 5.0 1 23 1102 1124 1102 1124 0.96 8 8 1.1e-07 7.3e-06 26.4 0.7 1 23 1130 1152 1130 1152 0.98
Sequence Information
- Coding Sequence
- ATGTGTTCAATATTTCGCAATCGCATCAATTACCGGGGCACAGGCAACACGCGCAGTGGCGCCTCCAGTGGTGGCGGTGCAGCGGGCGCTGCCCCAACCGCCGACAGGGACAGTCTGCTGGCCAAGGAGCTGAATGCggatagcaacaacaacggcagcgcTGCGGAGCAGGGGGCAGAGCTGGCGCCAGAGACGGAACTGCAACTGGAGGCGGTAGTGGAGACAGAGGCGGAGACGGAGGAGAGCTCGCTGCCCAGCGCTGAGCAGCCGGAGAACAGCAATGAGGCGCTGGATCTGTCGGTAATATCCGGCAGCCGACTGCCCAACAGCGGGCACGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCCACCGCGCTGGCGGGCTCCGCTGATCCCAGCGACCTGGCCATGGTGCAGTCAACGATCTTCAACGTGCAGCGCCAGCATctgatgcagctgcagctcatcCAGCACCTGCAGAGTCAATTGAAGCGGGCGGGTGGCGTGGTGGCTGCGCTCAGCAGGCAGGGCGCCAATGTCAATGAACCCGACGAGGTCGAGGAGGAAGAGGatgaggcggaggcggaggcggatgAGCAGCAGCCTGAGTCTGCCAAAGAACAGACGCGTGTTAATGGCGAGAGCGAACCGGAGAGGCGGGAGGAGAGTTCTAAGACTGATGGGCAGGAAATGTCCATGGCAAAGGAGGCAGCAGAGTGCAATAGGAAACGGGAGAGGgagcgagagcgagaaagGGAGCGAGAGCGGGCAAGAGAACGGGAACGTGAGCGGGCCCACCAGAAGATCGAGCATGAGATTGAGGCTGAGGCCGAACAGGAGACGGAGCATGAATATCAGCCGCTAATGTGCGACATTAGCTCCAGCCTGGCATCGAGCATCATCACCAATCACGACCCCCCGCCGGCGCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGGCGCACCGAGGAGGTGCTGGACTCTGCCTCGCAGAGTTTGCACGCGGCCCAAATGCAGGAGGAGTATTCGGAGTATGCCTCCAAGGAGGCGCAGGGTCGTGGCGAGATATTCAAGCATCGCTGCAAGTACTGTGGCAAGATCTTTGGCAGCTACTCGGCGCTGCAGATACATCTGCGCTCCCACACCGGCGAGCGGCCCTTCCACTGCAACGTCTGTGGCAGCAAGTTCACCACCAAAGGCAATCTCAAGGTGCACTATCAGCGGCACACGCAGATCTTCCCGCCCATGCTGATGCCCCCGGTGGTCAATGGTGGACCCGCGCCCGGGCCAACCGAGCAGTTTTCCGCGCTGACGCCCATTCGCCTGCCCTTTGTGCCCCCAGCGCCCCTggcaccgccaccgccgcctccGCTGCCTGCCGCAGCGCCAGCCAGCAGAGATCAGACCGAACAGCAGTTGGAGCCACAAGCCCTGACGATGCCGGCACAGCTGCATCAGGCCGAGGATCTGAGCAAGCCGACCAGGGAGAAGTCGCACTCGCCCGTCGAGCGGGTCCAGACGCCCAAGTCCCTGCCCGAGCGTAGAAGAAGCCAGAGTGCAGTGGAGCCTGTGGTGCTGCCTTCGGTGCTGCTGGCCGAGAAACAGGAAAAGGACAAGCCGAAGGACAGTCCCAAGCCGGTGACACCCACGTCGAGTAGTCGTCGCAACGGCGCCGTGCGCAAACGCCAGACGAGCAGCTCGGGCAGCCCGTCTGGCGAGGATCGGGATCATGCCGAGCATCTGCACATGGCCAAGCTGGTGCGCCGCTCCTCGGCCAGTCGGGATGGAACGGTCGCACTGCCGGCAGAGTACTCGCTGGCTCAGATGGAGCGCATCATTGACAAGTCGTGGGAGGATCTGATCGAGATCGACAAGACCTCGGAGACGTcgaagctgcagcagctggtggACAACATTGAGAACAAGCTAACCGATCCCAATCAGTGCATATTCTGCCAGAAGGTGATGTCCTGCCGCAGCTCGCTGCAGATGCACATACGCACCCACACGGGGGAGCGACCCTTCCGTTGCAAGATCTGCGGACGCGCCTTTGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATACACAAGATCAAGCCGCCGATGCGCAGCCAGTTCAAGTGCCCGGTGTGCCACCAGAAGTTCTCCAATGGCATCATCCTGCAGCagcacatacgcatacacaccATGGACGATGGCAGCGGCCAGGGGCAGGGTCAACCCATTGGCGCTGGGGATGTCGATCGGCTGGGCATTGAGGATCAAAACTCAAACAAGTCTTTGGGCACCTCGGACACATTGGACTTCTCCACCACCATATCGGATCACTCGGGCCAGCGGTCGGAGTCCTCGCAGGGCGGGGATTTCGATGAGTTCATGACCATGGACAGCACTGACGACTCCCGTGACAATTCCAGCGCTGCGACGGCCACGCCCGttgacagggacagggacagagaCAGACCCAGGCCCGCCCATGACTGCTGCGACGAGCGCTCCAGATCGGATCTCGAGGGAACCGGTGGACGTGAGAGCGCCAGCGGCGAAATGCCCGCCATGGATCTCTCATCTCCATCCTCATCCTcggcgtcggcggcggcgCGTCTCTTTGGAGTCAGCAACGGAGCGGccgctgcggcggctgctgctgctgccggagCTCTGCCCATGCTCGGCATGCCCATGCCCCCCAATCTACTGCTGATGGCGGCGGCGCGCGAGGAGATGCACGCCCTGGGCCAGGGGCATGCCAAGTTTCCGCTGCTGCCCTTCGGACCGCTCGGATTTATGGgaCTACAGCCGCCCCCAAATGTGTGCAATTTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCTTGGAGAGTCATCTACAGAGCGAACATGCCAAAGAAGTCTCGCCCCATTCCACTCGACCCCACTGCAATGAAGCGGTGTCGCCCTACGCAGCAAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCAAAGTCGTCACAGGAGCTGGCGCCTGCCGAGTTAGTCGCGCCATCGGCGGCATCCATCAAAGAGGAGCCCGAGTccgagcagctgctgcccgaGGAGGCGGGCTGCGAGGGCGTTGCAAGTGGCGCTGCCAGCAGCTATCAGCAGGAGGCAGCTGCCGCCGATGCGGAGCAGTCGCTGATGAAGATGCAGCTGCATGCACATCGCTTTCCAGCTAGTCCGCTGGACTTTCAGCAGGCGCTAATGTCCGCCGGCCCGCCCAGCTCTAGTCTGGATCCGCCGGTGAACAACAAGCACTTCTGCCACGTCTGTCGGCGCaacttcagctccagctcggcCCTCCAGATCCACATGCGCACCCACACCGGAGACAAGCCCTTCCAGTGCAACGTCTGCCAGAAGGCCTTCACCACCAAGGGTAACCTCAAGGTGCACATGGGCACGCACATGTGGACGAATCCCACATCGCGTCGCGGCCGTCGCATGTCCTTGGAACTGCCCATGCGTCCAGGACCTGGGCCGGGTGCCCCGCATGGAGCGCCCACTGCCGAACAGGAGTTCATGCAGCGTCGCCCGGAACTCTTCTTTCCCTACTTGCCACCCTTCTTCAACGGAATGCCGCCCAAGCCCGGCGAGCTTAGTCCTGGCGCGTTTGCCAACATACCTCCGCCGCATTTTGCAAACGGCGCCAAGTATCCGTATCCACCCGGACTGCTGAGTTTTCCCGGCTTTCTAGGGGGCGCAGGTCAGCAACATCATCCATATGGGCTGGAGGGACGAAGTAATAGCAAGTCACCAACTTCCGAGCCGGCGGAGAGTCCTTCCTCGCGGGAGGATGACGGAGCTGTGAGTAATAACATCTGGCATCCGTTGAGCAGCATTAAGGtggaaaacaatcaaaatgagAGCACTGGCAATCAGAGCGAGCATGAGCatgagcaggagcaggatcaGGACGACAATGGGGAGGTGGATGCTGACGCCGAGCCCGAGGCGGATGCGGAGGAGTCGGAGTCGCGGGGCGCTGAGAAGTAG
- Protein Sequence
- MCSIFRNRINYRGTGNTRSGASSGGGAAGAAPTADRDSLLAKELNADSNNNGSAAEQGAELAPETELQLEAVVETEAETEESSLPSAEQPENSNEALDLSVISGSRLPNSGHVALEALQHTKVAVAQFAATALAGSADPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGANVNEPDEVEEEEDEAEAEADEQQPESAKEQTRVNGESEPERREESSKTDGQEMSMAKEAAECNRKRERERERERERERARERERERAHQKIEHEIEAEAEQETEHEYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQGRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVNGGPAPGPTEQFSALTPIRLPFVPPAPLAPPPPPPLPAAAPASRDQTEQQLEPQALTMPAQLHQAEDLSKPTREKSHSPVERVQTPKSLPERRRSQSAVEPVVLPSVLLAEKQEKDKPKDSPKPVTPTSSSRRNGAVRKRQTSSSGSPSGEDRDHAEHLHMAKLVRRSSASRDGTVALPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGQGQGQPIGAGDVDRLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPVDRDRDRDRPRPAHDCCDERSRSDLEGTGGRESASGEMPAMDLSSPSSSSASAAARLFGVSNGAAAAAAAAAAGALPMLGMPMPPNLLLMAAAREEMHALGQGHAKFPLLPFGPLGFMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVSPHSTRPHCNEAVSPYAAKLTLNPNLFAKKPKSSQELAPAELVAPSAASIKEEPESEQLLPEEAGCEGVASGAASSYQQEAAAADAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGAPHGAPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLSFPGFLGGAGQQHHPYGLEGRSNSKSPTSEPAESPSSREDDGAVSNNIWHPLSSIKVENNQNESTGNQSEHEHEQEQDQDDNGEVDADAEPEADAEESESRGAEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -