Basic Information

Insect: Hirtodrosophila histrioides
Gene Symbol: -
Assembly: GCA_037075165.1
Location: JBAMCL010000464.1:113930-115607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.0081 16.8 2.3 1 23 92 114 92 114 0.97

2 11 1.6e-07 1.1e-05 25.8 1.6 1 23 120 143 120 143 0.97

3 11 1.2e-05 0.00079 20.0 0.5 1 23 149 171 149 171 0.97

4 11 6.6e-05 0.0044 17.6 0.4 1 23 177 199 177 200 0.95

5 11 1.9e-06 0.00012 22.5 0.9 1 23 207 229 207 229 0.97

6 11 0.00022 0.015 16.0 1.3 1 23 235 258 235 259 0.95

7 11 0.0063 0.42 11.4 0.1 1 23 264 286 264 286 0.97

8 11 2.5e-05 0.0017 18.9 2.7 1 23 292 314 292 314 0.98

9 11 2.3e-05 0.0015 19.1 4.7 1 23 320 342 320 342 0.99

10 11 0.00097 0.065 13.9 0.5 1 23 348 373 348 373 0.96

11 11 0.00051 0.034 14.8 0.1 1 20 379 398 379 400 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.0081	16.8	2.3	1	23	92	114	92	114	0.97
2	11	1.6e-07	1.1e-05	25.8	1.6	1	23	120	143	120	143	0.97
3	11	1.2e-05	0.00079	20.0	0.5	1	23	149	171	149	171	0.97
4	11	6.6e-05	0.0044	17.6	0.4	1	23	177	199	177	200	0.95
5	11	1.9e-06	0.00012	22.5	0.9	1	23	207	229	207	229	0.97
6	11	0.00022	0.015	16.0	1.3	1	23	235	258	235	259	0.95
7	11	0.0063	0.42	11.4	0.1	1	23	264	286	264	286	0.97
8	11	2.5e-05	0.0017	18.9	2.7	1	23	292	314	292	314	0.98
9	11	2.3e-05	0.0015	19.1	4.7	1	23	320	342	320	342	0.99
10	11	0.00097	0.065	13.9	0.5	1	23	348	373	348	373	0.96
11	11	0.00051	0.034	14.8	0.1	1	20	379	398	379	400	0.95

Sequence Information

Coding Sequence: ATGGTACGCAGCCGTCGCAGCCTCTCCAAGGAGGATGCCGTCTCTTTGCTCACGGATAGCGGCATCTCGCTCTCATCGCCGCCGGCGGCACGCGAATCCTCGCCCACAGCGCCGCCCATCAAGCGGCGCAAGAGCAGTCTTAACAGTCTGCAGGATTTGTATGTGGATGACGAGCTCGAGGCCGAGCAGGACTCCACAGATGCAGATGCTGACTACATACAGCCGGAGCCAAAGAAATCACCACGCAAATCGGACTCATCGCGTCGCAAGAATCATGTGTGCACTCACTGCTCCAAGGAATTTGGTGGCCGGACCGATCTGTTACGTCACATGCTCATCCACTCGGACGAGCGACCACACAAGTGCAAAGAGTGCGGCAAAAGCTATCGACAGGCTGTGAATTTGAAGAATCACATAACCACCGCACACGAGCACAAGAAACAGTTCGCTTGCACGGAGTGTCCCAAATCGTTTGCACTCAAGGAGCGTCTAAAGCTGCATATGCGACTGCACTCGGGAGAGAAGCCATATCCATGTGCGCTTTGCGAGAAACGCTTTGCCCGGGGTGGTCAGttgcagcagcacaTGGTGTCGCATCACAAGACGAGCATTCAGCAATTCAACTGCACCAAATGCTCGGCCAGCTTCTCGACCAATGCCAATCTGCGCGTGCATATGGAACGCCACGAGCAGGGCATGGATCACAGATGCTCCATTTGCGAGAAACAGTTTGCCAATGAATTAGCGCTGCGCGCCCATATTAATCAGGAGCACCACAAGCTGAGTCAATTCGATTGCGAGATTTGCCACAAGGCCATCGAACCGGATGAGGATCTGGCCACGCACATGCAGAAGCATGCTGCGGTAAAGACGCACGTCTGTGAGGTATGCAATTCTTATTTCACACAGAAATCGCAGTACAATGTGCATATGCGCATGCACACAGGCGAGCGGCCATATCAATGTCGGATCTGTCATCAAACATTTGCCCACTCCAGCGTGCTGAAGCTGCACATACGCAAACACACAGGCGAGAAGCCGTTTCCCTGCCAGCTTTGTGATGATGAGGTGGCTTTCTCGCAGTTGGCGCATCTCAAGAATCACATGAAGAAGATACACAACCAACAGAAGTCCTACATGTGCCCTGGCTGCCATGAGTTCTTCAAGATCAAGGTGGAGCTGCAGTCGCATATCGAGCTATGTAGCAAGTGTCAACCATCGGACGAGCTCGACGATAGTCAAACAGAAGATTCACTGACGCTATCCAGCATACGCTTTAATATGGCCGTGGTGCTCAAGAAGATTACCTCGGCGCAGAAGCTGCGCCAGCTGGGCTACGAGAAGCGTCTAATTGATAATGTCATCATTGCCTCATTGAAGCTGGCACAGCGTCCGACGCATGATGATGTAAAGCTAACGCCTTTGACCAGGCTGCGTTTGAATGTGGAGGAGTTTCTTAAGTGGATTGTGCCGGCGCCCGCCATGAAAAAGTTCACCGAGGAGCTGCTCTCCATCGATACGATACTCGATAAGATTGCGACCATGTACATGAAGCAAAAGTAG
Protein Sequence: MVRSRRSLSKEDAVSLLTDSGISLSSPPAARESSPTAPPIKRRKSSLNSLQDLYVDDELEAEQDSTDADADYIQPEPKKSPRKSDSSRRKNHVCTHCSKEFGGRTDLLRHMLIHSDERPHKCKECGKSYRQAVNLKNHITTAHEHKKQFACTECPKSFALKERLKLHMRLHSGEKPYPCALCEKRFARGGQLQQHMVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMDHRCSICEKQFANELALRAHINQEHHKLSQFDCEICHKAIEPDEDLATHMQKHAAVKTHVCEVCNSYFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFPCQLCDDEVAFSQLAHLKNHMKKIHNQQKSYMCPGCHEFFKIKVELQSHIELCSKCQPSDELDDSQTEDSLTLSSIRFNMAVVLKKITSAQKLRQLGYEKRLIDNVIIASLKLAQRPTHDDVKLTPLTRLRLNVEEFLKWIVPAPAMKKFTEELLSIDTILDKIATMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01324297;
90% Identity: iTF_00534722;
80% Identity: -