Hhis006871.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila histrioides
Gene Symbol
-
Assembly
GCA_037075165.1
Location
JBAMCL010000383.1:216355-219655[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00033 0.022 15.4 0.2 1 23 270 292 270 292 0.99
2 17 0.00015 0.0097 16.5 5.7 1 23 299 322 299 322 0.98
3 17 5.9e-05 0.0039 17.8 1.3 1 23 328 350 328 350 0.99
4 17 0.0015 0.1 13.3 0.4 1 23 357 380 357 380 0.95
5 17 0.024 1.6 9.6 2.7 1 23 386 408 386 408 0.97
6 17 0.00033 0.022 15.4 2.2 2 23 411 433 410 433 0.96
7 17 0.00057 0.038 14.7 0.9 1 23 438 460 438 460 0.99
8 17 0.027 1.8 9.4 1.5 2 23 463 484 462 484 0.95
9 17 1.9e-05 0.0013 19.3 1.7 1 23 489 511 489 511 0.98
10 17 0.00056 0.038 14.7 4.0 2 23 514 536 513 536 0.94
11 17 0.01 0.68 10.7 1.7 1 23 541 563 541 563 0.96
12 17 2.3e-05 0.0015 19.1 1.4 1 23 569 592 569 592 0.97
13 17 8.7e-07 5.8e-05 23.5 0.6 1 23 598 620 598 620 0.98
14 17 2.9e-05 0.0019 18.8 0.8 3 23 628 649 627 649 0.97
15 17 6.9e-05 0.0046 17.6 5.1 1 23 649 671 649 671 0.97
16 17 0.49 33 5.4 2.2 1 23 782 804 782 804 0.95
17 17 0.019 1.3 9.9 1.2 1 21 810 832 810 833 0.95

Sequence Information

Coding Sequence
atggaGATCTGTCGCGCCTGCCTGAGCAGCACATTGAAATTTGTGGATATATACTCAGAACCAGCATTGCCCGATTATCAATGTAGCCTTGCTGATATGATAAACGCCCTGGCTAATTTCAAATTAGACCCAGAGGATAATTTACCGCGCAAACTGTGTGATTCGTGCTATTTAAGTgtacaaaatgcatttaaattcaagTCCATGCTCGAGAAGAACAACCTGGTGCTCATCAGGCGGGCAATCAAGAGGGAAAGCATTTCATTTGACGCAGACGAAGAGATGGATCAGTCTGCGATCATTACGTGGGTACACATGCAAGATCAGTCATCCGTAGCAAATGAGTCTCGCGAAGCGGCTCTCCCCCAGTCCACAATTAAACGTGAGGTTGACGTCAACACCAGCAATTGCATTACAGAGAGTGATTTAGTTTGCCAGCTGGATCTGAGCAAGTCGATGATAGTAGAAAACGCATTGGATTCAGACTTGGCCGAGCAGGCGCAGCAAGAGAAAAGTAGTCGGACAGTTGTCGGAGAATCGCCTCGTACGAGGGCGTCCAAGGCACGCTTAGTGCATCCCTACATTGAAAATGATTCCATTGTCAGTGCCAAGGGGATAACTGAAGGCGAGGAGAACTCTGAAGACGATGAGAATATTGATGGCGACGAGAATTGGGATGGCAACGAGAAGTCTGCAAGCGATAAGGAGTCTGAATACTCTGAGGACTCCGACGACTCTGAGGAGAGTTCGGATAGCGCGGACTCCAACGCAAGCAGCTATTATCCCCGTGGATGCAAGCCAAAGCCGTACAAATGCGATCAGTGCCAGGCAGCATTTGTACTTCCCATATCTCTAGAAAATCACAAGCGCACTCATGAAAGCCCACCACAAGACTTTAAGTGTTTCGAATGCGATATATCCTTTAAAAAGCGCTTACATTACAATAAACACATGCGTAGCACGCATCCTGTTGAGCGTCCATACAAATGCGAACTATGCCAGATATCATATAAGACTGCCATATCTCTAAAAAAGCACAAACTCACCCACGAGGATCCAACACAAGAGTTCAAGTGTTACCAATGCGATATGATCTTCACAGTGGCCGGACTACTTGAAAAACACTTCTCTAGCGAGCATCCTGATCAGCGGCCTTACAAGTGTTCCGAGTGCCCAATGACCTTTCTAAAAACTACGCATCTCAATTATCACATCGTCAAGCACACCCTCAAATGTTCGGAATGCAAGATGTCTTTTGAGCAGCACAATCAACTTAAAGAACATATTCTAAGCACGCATCCTGAACTGACATACAAGTGTTCCCAATGCCCAATGGCCTTTCTACAAAAGGCGTATCTCAAGAATCACCTTACCACGCATAGCATGAAGTGTTCACAATGCGAGATGTCCTTTGAGCGCAAACAACTCAAGAACCATTTATTAAGCATGCATCCTGAACTAACACACAAGTGTCCCCAATGCCCAATGTCCTTTCAAAGAAGAGATCTTCTCGAGAAGCACTTGTCTTCGCACATCATCCAGTGTTCGGAATGCAAGATGACTTTTAAGCAGCGCAAACATCTCAAAGAACATTTTCTAAGCCAGCATCCTGAATTGACACACAAGTGTTCCCAGTGCCCAATGGTCTTTGTAAGTGGGGATAATCTCAAGTGTCACATGGTCATCCACACCGACAATGGTACCTTCAACTGTTCGCAGTGCGAAAGGACTTTTAAAAATGAGACACGTCTTAAGGTTCATATTCGCACAGCTCACGCCTTGGAGCTACCATTCAAGTGTTCCCAGTGCCCCAAGGCATTTGCAAACAGCTCCAGTCTCCTGAAGCACACAAATATCCACAACAAGGAACGTACCGTCGCCTGTCCCCATTGCGAGATGTTCTTCAAACAGAGTTCAGGTCTAAAGCTACATTTACGTATCAATCATGAGTGTCCCCATTGCCCAAAGATCTGCACAAGAAAACTGCAACTCCAGAAGCATATCCTATCCCACACCGAAGATAACTGCCCAAACTGGGTCACCTGCACGGATTTGTCCCTGtccgaggaggaggaggagggtcTGCCCAGCGAGCTGTGCCAGGCGTGCCATGACCAGTTGCAGCAGTTGTATGCATTCCGCGCCAAGTGCATTGCAGCATCATCACCAACTGTAGAAGTCTTGGAGCTGCAGACATGCAACGCTAAGAGGCTAAGAAGGGAGCAGCAAAGCGAAGAGTCTGAAAGTAAGTTAAGTGAAACAGAAGCCACCTCACAGAAAACTATAGGAAGCCCACAATTAGACGACGAGCAGAGTTCCTTGTCTAAGCCTTCCACACCTGCCTTCAAATGCGACATTTGCTCCACGCGTTTTTTGGTGGAGCATCGACTGCTGGCGCACAAGCGCCAACATGAAGGTCTGATGCCATATCCTTGCACTGAGGCGGGCTGTGATCGCGCCTTCAATCGCTTCCACTGCCTGTCGGAGCACCTGAAGCAACAGTCGGACACCAGCCGCCGCTGGTTTAGTAGTGAGTAG
Protein Sequence
MEICRACLSSTLKFVDIYSEPALPDYQCSLADMINALANFKLDPEDNLPRKLCDSCYLSVQNAFKFKSMLEKNNLVLIRRAIKRESISFDADEEMDQSAIITWVHMQDQSSVANESREAALPQSTIKREVDVNTSNCITESDLVCQLDLSKSMIVENALDSDLAEQAQQEKSSRTVVGESPRTRASKARLVHPYIENDSIVSAKGITEGEENSEDDENIDGDENWDGNEKSASDKESEYSEDSDDSEESSDSADSNASSYYPRGCKPKPYKCDQCQAAFVLPISLENHKRTHESPPQDFKCFECDISFKKRLHYNKHMRSTHPVERPYKCELCQISYKTAISLKKHKLTHEDPTQEFKCYQCDMIFTVAGLLEKHFSSEHPDQRPYKCSECPMTFLKTTHLNYHIVKHTLKCSECKMSFEQHNQLKEHILSTHPELTYKCSQCPMAFLQKAYLKNHLTTHSMKCSQCEMSFERKQLKNHLLSMHPELTHKCPQCPMSFQRRDLLEKHLSSHIIQCSECKMTFKQRKHLKEHFLSQHPELTHKCSQCPMVFVSGDNLKCHMVIHTDNGTFNCSQCERTFKNETRLKVHIRTAHALELPFKCSQCPKAFANSSSLLKHTNIHNKERTVACPHCEMFFKQSSGLKLHLRINHECPHCPKICTRKLQLQKHILSHTEDNCPNWVTCTDLSLSEEEEEGLPSELCQACHDQLQQLYAFRAKCIAASSPTVEVLELQTCNAKRLRREQQSEESESKLSETEATSQKTIGSPQLDDEQSSLSKPSTPAFKCDICSTRFLVEHRLLAHKRQHEGLMPYPCTEAGCDRAFNRFHCLSEHLKQQSDTSRRWFSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-