Hhis014166.1
Basic Information
- Insect
- Hirtodrosophila histrioides
- Gene Symbol
- -
- Assembly
- GCA_037075165.1
- Location
- JBAMCL010000637.1:1060144-1063180[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.6 1.7e+02 3.2 2.5 1 23 17 39 17 39 0.97 2 20 0.0035 0.24 12.2 0.1 1 23 118 141 118 141 0.97 3 20 0.056 3.8 8.4 0.1 3 22 152 171 150 171 0.93 4 20 0.015 1 10.2 1.7 1 23 180 203 180 203 0.96 5 20 0.0011 0.071 13.8 0.4 2 23 231 252 230 252 0.97 6 20 0.00029 0.019 15.6 8.1 1 23 260 282 260 282 0.99 7 20 0.0089 0.59 10.9 0.9 1 23 433 456 433 456 0.95 8 20 0.0016 0.11 13.2 0.6 2 22 464 484 463 484 0.95 9 20 0.11 7.2 7.5 0.4 1 23 493 516 493 516 0.89 10 20 3.1e-06 0.0002 21.8 1.9 1 23 541 563 541 563 0.98 11 20 0.00011 0.0072 17.0 0.9 1 23 570 592 570 592 0.98 12 20 0.037 2.4 9.0 0.0 2 21 619 638 618 639 0.93 13 20 0.0086 0.57 11.0 4.7 1 23 684 707 684 707 0.96 14 20 0.0041 0.27 12.0 0.4 1 23 744 767 744 767 0.96 15 20 0.00075 0.05 14.3 3.5 1 23 792 815 792 815 0.97 16 20 1.1e-05 0.0007 20.1 0.1 2 23 842 863 841 863 0.95 17 20 3.6e-05 0.0024 18.5 2.9 1 23 869 891 869 891 0.99 18 20 3e-06 0.0002 21.9 2.0 1 23 897 919 897 919 0.97 19 20 4.5e-08 3e-06 27.6 2.4 1 23 925 947 925 947 0.99 20 20 0.00054 0.036 14.8 0.3 1 21 953 973 953 977 0.91
Sequence Information
- Coding Sequence
- ATGAAGCAGGAGGatgaggagcagcagcaggtcaATGAAAGCAGTCAGTTCCATTGTTGCCTGTGCGATGCTCAACTGCAGAGCATGGCAACCCTGCGTGACCATTTACTCACTCATCGCGATGGGCACACCGGCATCGATCCAGATCACCGGGCTGCCTTCTTTCGTTGCCATTACCCAGATGGTCTTGATTGCAGCGTGACAGAGCTGGGCACACGCATTGCCTGCGACTTTGTGGCGCAGGATTATGGACGCTATTTTAATGCCTGCAAAAGCAACGGCCAAGAGCTGGATTTCTTTGACTCGGATACAGATTTGAGCGATGTGGAGCAGTCGGCGTCGTCAGCTCTGTATACGTGTGATTTGTGTGGTGAGATCATCATGCGGCTTGCCAACCTTCTTCAGCATCAACAGAGTCAACATAATGAGCTGGATGACACATTGCCTCATTTGTGCAGTGATTGTGGGCTGGGTTTTGTGGCTGAGCCACTGCTCCGACAGCATCGCCGACGCGTGTGTGCCAAGCAGCATGCCAAATACCATTGCCAGCGTTGCAAGCTTCCCTTTATCTGGCAGTCCAACTACGAGCGGCATATGCAGCTGGAGCACGAGGTGGAGCCTGATGATGACCATGATCAGGTATCCAGCATCAATCTGAGAAGCAAACGACAGCCAGCATCTGTAAAGCTGCAGTGCGACGAGTGTGAAAAGGTCTTCATCTGGACAAAGGACTTGACGCGCCACAAGCGCATCCATCAGCCGCAGACGTCGGCGCAGTACGAGTGCTGTCATTGCGAACGTAAGTTCCATCGCAAGGATGGCCTAAAGTCGCATATGCGAGTGCACGgcgagcagcagctggacGAGTTGGCGGCCGCAGCCATCAGTGATCAAACAGCGACGGTGCTACAACGCGCGCCCTTGGTGTTGACGCAACTGTGCAGGCCCCACGGCTGTAAGCAAATCCAATGCATGATCTGTCTCTCCCAACACACTAAGATCTCTGATCTGCGAACGCATTTGTTGACACACCAGTTTGTGGTGAGGTTTGTCGAGGAGCGTGCCAAGCCGGAAAGCATTGCCAGCATTAGCCGTGGACTATATCCGGAGCTGGGCACACCACTGCATAAGCAACAATTGATCGATCGCATCCAGAGCGATGTGGCCAAGGGTGTTGAGTTGGAAAGATTCATATCCATTACCAACGAGGCGGGCATTGAGTTGTCTCTGGACAGCAGCGAAACTGAAACGGATTCAGACTCAGCCGAACCAGAAAGAAGCAGCATCGGACGACTGTACGTCTGTGATCTGTGTCAGCTGAAGTTGCCGCGCAAGCATCAGCTCTATGCACATCAGCTGGAGCAGCATGCATGGCAACGGGCCACCTGGGTTTGTTCCCACTGCCAGGCAACATTCGTCAATGAACAGCTGCTGGAGCATCATTATCGTACGCTCTGCCGCAACAGCCAGAAGCGTTTTCTTTGCCGCAAATGTCCATTGCGCTTTCGTTGGCGCGACAATCTGAAGCTGCACACAGGCGTCGCACATCAGGAAGGAACTGTAGAACAGACGAAAGCAGGCATTCCAATGAATGGGGCTCAATTACTGCCCGTTGTCAGTTACGAATGCACCGAATGCAATCGCAgcttcaaaatgcaaaaggatCTCACGCGACATACGCTGATGCACTCACAGGAGGCAAACATTTATCGGTGCCGTTGGTGTGCGCGTCGCTTCTATCGCCAGGCCAATCTGCTGCAGCACATTGAGCGTCATGGCATCACCGCAGCCCAGCTGCCTTATGCTGAGGCACTACTCAATGCCAGCCGACATCCGCATGGCCAGAAGTGCATCCAGTGTAAGGTGTGCGATGTGCGTTATCCCACCATTGCCGCACTGCGCTCCCATCTTCTGTCCACGCCGGCGGGCACACACCATGACATTGGCTCCATGCTCAACTACTCCATTACCAATCAGCTGGGTTACGAGCTGCATCTGGATGACTCCGAAACAGATGAGGAGATCAAGCCACCAGGCATACCTACGCACTACACCTGCAGCATGTGCCAGTTGCGTTGTGTGCGTAAATATGAGctgcatcagcatcagcaggcCATGCACCGGCTGGAACGCATTAGCGAAGGCTGTGATCAGTGCATCTATAAGAGTGTCTCATCGGATCTCATTGCGTACCATCGGCGCGTGCTGTGTGGCAACACAGAGAAGCAGTTCAAGTGCGTCAAGTGCGGCTACATGTTCATGTGGGAGTCAAATCTGTTACTGCACATGCAGCTGCAACATCCGAGCAACGAGGGGCAGGACGAGCAGGTCTCTATGACTGCGCCGGATGTGCCCAGTGTTGACTGTCAGATCTTTCAGTGTGGCCAGTGCCCGCGTAAATACAATCGAAAGGATCGACTTACGGCGCATGTGAAGAAGTGTCATACGCCAGGCGCAACGGGCTCAACTGTGGCCCAAACAAAAACCATAATGACAGCCGCTGCCAAGCAGCAAAAGAGTTTTCTCTGCGCCTTCTGCGGCAAGGCAGTGAGCTCGTCCTCAAAtctaattatacatatacgtCGCCATACCGGCGAGAAGCCATTCAAGTGCGACTATTGCGACATGGCTTTTCCACGCTCCTCCGATCTGCAGTGCCACCGTCGCACTCACACCGGTGAGCGGCCACATATCTGCACCGTTTGCCAGAAGGGATTCGCGCGCTCTTATAAGCTGCAGCAGCATATGCGCATCCACAATGGCGAACGGCCCTATAAGTGCACCTATTGCGACAAGAGCTTCACCCAGTCAAATGACCTGACCCTCCACATTCGCCGGCACACGGGGGAGCGACCCTATCAATGCAACACCTGCGGAGAGCGCTTTATTCAGGGCACAGCACTCAAAAACCATCGCCTGCAGAACGGTCACTACGAGGCGGAGGAAGGCCAAGCTAAAGCTACTTGA
- Protein Sequence
- MKQEDEEQQQVNESSQFHCCLCDAQLQSMATLRDHLLTHRDGHTGIDPDHRAAFFRCHYPDGLDCSVTELGTRIACDFVAQDYGRYFNACKSNGQELDFFDSDTDLSDVEQSASSALYTCDLCGEIIMRLANLLQHQQSQHNELDDTLPHLCSDCGLGFVAEPLLRQHRRRVCAKQHAKYHCQRCKLPFIWQSNYERHMQLEHEVEPDDDHDQVSSINLRSKRQPASVKLQCDECEKVFIWTKDLTRHKRIHQPQTSAQYECCHCERKFHRKDGLKSHMRVHGEQQLDELAAAAISDQTATVLQRAPLVLTQLCRPHGCKQIQCMICLSQHTKISDLRTHLLTHQFVVRFVEERAKPESIASISRGLYPELGTPLHKQQLIDRIQSDVAKGVELERFISITNEAGIELSLDSSETETDSDSAEPERSSIGRLYVCDLCQLKLPRKHQLYAHQLEQHAWQRATWVCSHCQATFVNEQLLEHHYRTLCRNSQKRFLCRKCPLRFRWRDNLKLHTGVAHQEGTVEQTKAGIPMNGAQLLPVVSYECTECNRSFKMQKDLTRHTLMHSQEANIYRCRWCARRFYRQANLLQHIERHGITAAQLPYAEALLNASRHPHGQKCIQCKVCDVRYPTIAALRSHLLSTPAGTHHDIGSMLNYSITNQLGYELHLDDSETDEEIKPPGIPTHYTCSMCQLRCVRKYELHQHQQAMHRLERISEGCDQCIYKSVSSDLIAYHRRVLCGNTEKQFKCVKCGYMFMWESNLLLHMQLQHPSNEGQDEQVSMTAPDVPSVDCQIFQCGQCPRKYNRKDRLTAHVKKCHTPGATGSTVAQTKTIMTAAAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHICTVCQKGFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQNGHYEAEEGQAKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -