Hdun010623.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000751.1:433497-437376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.028 1.8 9.4 1.2 1 23 170 193 170 194 0.95 2 13 0.0022 0.14 12.9 3.1 2 23 242 264 238 264 0.90 3 13 0.18 11 6.8 0.9 1 23 369 392 369 392 0.93 4 13 3.1 2e+02 2.9 5.8 2 23 441 462 440 463 0.94 5 13 0.00023 0.014 15.9 0.5 1 23 528 551 528 551 0.90 6 13 8.6 5.4e+02 1.5 0.1 2 14 570 582 569 594 0.83 7 13 0.00086 0.054 14.1 3.3 2 23 602 624 602 624 0.96 8 13 0.00049 0.031 14.9 0.1 1 23 706 729 706 729 0.97 9 13 0.00018 0.011 16.3 0.3 1 23 776 799 776 799 0.93 10 13 0.0014 0.091 13.4 2.2 2 23 849 871 848 871 0.97 11 13 0.0068 0.43 11.3 1.1 1 23 952 975 952 975 0.92 12 13 0.17 11 6.9 1.5 1 21 1027 1047 1027 1048 0.95 13 13 0.14 8.6 7.2 0.6 3 23 1105 1128 1103 1128 0.84
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGACCTGTGGACGTCAATGTTCTCAGCCGATTACGATGAGGCCGAGGGTGAGGTGACAGGCGACGAGACCAGCCTCAAATatggcaatggaaatgatAGTCAAAGTCAAATGCCTGCAGAAGCAGACGATATCGAGGCTGTGGAAGGCGACgattttgatgatgatgaaggtGAAGGGGTTGATGAGGGCAGCACTGGTAACGGCTTTGGCAACGGAAAACAAAAGGATTTCGAGCCCGGTGATGATGAGATATTTGATTTTAAGCTGGAGCCACTCGTGAGCATTGCAGAGCCACCACCCCCGCCTTTAGCACCGACGGTGCCTACGATTGGTCCACGAGTGCGTCCCCTGCAGCGGCACCCTCAGCCCGGCTCTTTTGGCCCGGGGCGAGGCAAGGAAATGCGCTTTTCTGGGGCGCCCACGCGGCCTGCCACATCGCAGATCAATGCCACTGATGAGAACGGCGTCCCCATAAACTACGAGCTGGGCGTGATCTACATATGCCCTGCCTGCGGAGATGAATACAGGCTGCAGGATCACTGGAAGAGGCACATGAACTATGTGCATCACTTCAACACGCGCCGCGGCCTCAACTTTGAGCCCCTCGACAAACTGTATCATCGCTGCCTGGAGTGCAACAAGCGCATTGCCATGCACAGCAGGGAGAATCTACTGAAGCACAAGTTCACCCATCTGCCATTCCGTTGCACCAAGTGCTACATCTGCAAGCGTGAGTACAAATATAGGCAAGATCTCATGGTCCATTTGCGGATGGTTCACATGGACGAGGTGGTAGGCATGATGCGAAGCATGCGGGATGCTGGCGCTGGACGCAAGACGCGTGTGCGCGAGCCCCGCACTGAACAAATGGAGCGAATGCATCAGCTAACGGACGATGACAACGATTGTATTGAGGTGCGCAATGAGCTGATGGAGCCGGATGTCGATGATGGCAGCAGCTCCGCGTACACGGCAGAGGAACCAAGTCACAGCTCCAGGCAGGCGTTAAGCAAGAAGCAGCAGCGTCAGACAGGCaagccagctgcagctggtaATAGTGCAGCGGCGGATATATGCGAGGATTATATACACTACACGTGCCCGGATTGCGCAACCGAATGCGAGAACCATGCACAATGGAGCCAGCACATTGAGTTCGTGCACGACTATGTCAGCCGGCGTGGGCTTAACTTCCGCAGTGTCGACATGCAGATGCAGTGCATCGAGTGCAAAAAgATTGTCATACCGAACACCATTAAGGCACTGCGCACCCACAAGTTCACCCATCTGCCGCATCCGGAATGGCTGCGCTGCAAGCTGTGCTTCAAGGGCTACAGGGAGCATCATGAAGTGGTCACACATTTGCTTAGGCACCACAATTTGGAATCACTTGTGCcagaggcggaggcggagaaAGCTTCCAGTGGAGCTGgcgatgatggtgatggcgatgaCACTGTTTTGGGCAATGGCAGCAGTATGTACGACGACGATTCCACGCAGTGGGACGATGGTCCGCGAAGAGGCGCCCGCATTAGCAACGATGACCTGTACGAGCCGAACATTGACTACCTGTGTCCACAGTGCGGCAAGGAGTTCAGCCAAAAGCGGCAGTGGCGCCTGCATGTGGACCAGACGCACGGCATGAACGATCTGGCCAAGCTGAACTTTGAGATGATCAACGAGCGGCAGCTGAAGTGCACTGAGTGCGAGAAGATCATCACGAATGCCTATGGTATACAGAATGCGCAGCAGCACAGGATCACCCATTTGCCGTTCAAGGCCTATGCCAGGTGTCGCAAATGCCACAAATCCTACACGGATCGCAAAGGTTTGGTCAAGCATTTGGCCACCTATCATCGGGTGGGCTACGATGGCCGCAAATCATTGACGGGTTTGGCGGCGAGCATTCCTCCTCCCATGTCTTCCTCGAAGCAGTCGCCCCGAAAGCAAATTGTCACTGTGGCTAATCAAACATATGAGATTATATACCTCGATGATGAGCAATCTCCTGAGGAGAATGACTTTGGAGAGCAAATGCAGGCGGAGGATGATGATTATGGTACGATGCCCTCTGCCTCCGCTCCGCCTCATTCGAATCGATTTAAATGCGTGGACTGCGGCTCCTTATTTGCCAACCGGGCGGCACTCAAAATCCACATACGGGAAGAGCATGACTTTGTGGATAACCAGCTCAGTGCCAAGAAATATGACAATGATGTGGCTGCGCAATCACCAGCACGTGATTCTTCTGCAGACGTAGCTACCGTTCTGAACCATTCAGGCAGCTCCATCGTTGAGCAAAATTTCATCTTCCTGTGCCCGTCCTGCGGCAAAGAATACAAGACGCAGTTCGAGTGGCGTCGCCACATCAACGAAGCCCACAACTTTGACAAGCGGCAGTACTTGAACATGCGGCAGCTGGACAAGTATCGCTATCAGTGCACCCAATGCAAGGACATTGTCAGCAACTCCAAGCTGAAGGGCCTGCAGGATCATCACTTCCGCCACCTGCCGTACCGGCTATACTTGAAGTGCCTAGTCTGCGGCACCTGCTACAATCACAAGCCCAACATTGCTGCCCATTTGCGAACGCGCCACAACATCTTCGAAAAGGAGACGCCCTGGCGGGAACAGCCGTCGAAGCCGCCGTATGCTTATGccaaggataaggataaggatgaGCGGCCTGGACAGCCATCGCCCACGGGCGTGTCACCGTATGCCGGTGGTCGCTCCCTGAAACCCCAGCCCGGAGTGCTGCCCACACGTCCAGCGGGACTGAACACCTTGGAGGATAGCATTTCGTATCACAATGCTGTGGATCTGGACTTCATCACATACTACTGCCCCAAGTGCAACCAGAACTTTGAATCGCACGCTTTCTGGCGCAAACACATCGTCGAGGTGCACAACTACAATTGCCGGGAGGGCCTCAATTTCAGGCAGCTGGACAACCATCACTATCTGTGCCTGGAGTGCTACAAGCGTGTGACCGTCACACACACCAAGGGCGCCATCGGGCAGCTGCAGTCGCACAAGTTCCGCCATTTGCCCTACCGATCGTTCAAGTGTCTGACCTGCAGCGGCGAGTTCGTCAGGAAGCAGATGTTCTTCAAGCATCTCAATCGGGACACGAATCGCTGCGACAATAAGCCGGAGGTCGAGGGTGAGGGCGAGGTTGTCAACGAGGACGACGATGAGGAGGGGGGCGTGGCGGCCACACAAACTGCTGAAACGGAGGATACCGATGGTGACGATGTGGAAACGGATCTAGATCCATCCACCTACTGTATGATATGTCCGCAGTGTGGTGACAGTTTCTCCACCAGCAGTAAGGCGCATTGGCGACAGCACATCAACATATTCCATGGACTGCGCAAGCGGCATTTGCTCCACATGCGCAGGATTGGCGAGGGCCGTTATCGTTGCATTGACTGTGAGGAGCTGTTGTACACGCCTAAGCTGCGCGTGCTCCAGGAGCATCGATTCAAGCATATGCCCCATGCCGACTACCTGCGATGCGAGCTGTGCGAGAATCCAGAAGGCGGCAGTGCCAACGGTCTACACAGCTTCCATGAATTGCAGCAGCACATGCGGGAGAAGCATCCCACGGCTACTCAGCGTAAGAAGCAGATGGATGGGGAGGAAGTTGAGGAGCaggaggatgatgatgacgacgacgataTGGATAGCCAACCAACGAATTATTCGGAAAATAGTCCGCAAATATCCCTTCAGCCCCATATGACGGTCGATGATACGGAGGAATTGGAGTCCGATGAACAGTATCTTCTAGGATAG
- Protein Sequence
- MEGMDLWTSMFSADYDEAEGEVTGDETSLKYGNGNDSQSQMPAEADDIEAVEGDDFDDDEGEGVDEGSTGNGFGNGKQKDFEPGDDEIFDFKLEPLVSIAEPPPPPLAPTVPTIGPRVRPLQRHPQPGSFGPGRGKEMRFSGAPTRPATSQINATDENGVPINYELGVIYICPACGDEYRLQDHWKRHMNYVHHFNTRRGLNFEPLDKLYHRCLECNKRIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMVHMDEVVGMMRSMRDAGAGRKTRVREPRTEQMERMHQLTDDDNDCIEVRNELMEPDVDDGSSSAYTAEEPSHSSRQALSKKQQRQTGKPAAAGNSAAADICEDYIHYTCPDCATECENHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCIECKKIVIPNTIKALRTHKFTHLPHPEWLRCKLCFKGYREHHEVVTHLLRHHNLESLVPEAEAEKASSGAGDDGDGDDTVLGNGSSMYDDDSTQWDDGPRRGARISNDDLYEPNIDYLCPQCGKEFSQKRQWRLHVDQTHGMNDLAKLNFEMINERQLKCTECEKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYDGRKSLTGLAASIPPPMSSSKQSPRKQIVTVANQTYEIIYLDDEQSPEENDFGEQMQAEDDDYGTMPSASAPPHSNRFKCVDCGSLFANRAALKIHIREEHDFVDNQLSAKKYDNDVAAQSPARDSSADVATVLNHSGSSIVEQNFIFLCPSCGKEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDIVSNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFEKETPWREQPSKPPYAYAKDKDKDERPGQPSPTGVSPYAGGRSLKPQPGVLPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNQNFESHAFWRKHIVEVHNYNCREGLNFRQLDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCSGEFVRKQMFFKHLNRDTNRCDNKPEVEGEGEVVNEDDDEEGGVAATQTAETEDTDGDDVETDLDPSTYCMICPQCGDSFSTSSKAHWRQHINIFHGLRKRHLLHMRRIGEGRYRCIDCEELLYTPKLRVLQEHRFKHMPHADYLRCELCENPEGGSANGLHSFHELQQHMREKHPTATQRKKQMDGEEVEEQEDDDDDDDMDSQPTNYSENSPQISLQPHMTVDDTEELESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -