Hdun013973.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000806.1:3344021-3349851[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.001 0.063 13.9 2.0 1 23 766 788 766 788 0.98 2 8 0.00026 0.017 15.7 1.3 1 23 820 842 820 842 0.97 3 8 1.1 66 4.4 0.2 2 19 851 867 850 873 0.80 4 8 0.042 2.6 8.8 0.0 3 23 880 901 879 901 0.96 5 8 0.00032 0.02 15.5 3.5 1 23 907 929 907 929 0.97 6 8 0.046 2.9 8.7 0.2 1 23 936 959 936 959 0.95 7 8 0.00042 0.026 15.1 2.2 2 20 966 984 965 987 0.91 8 8 0.26 16 6.3 8.3 1 23 993 1016 993 1016 0.93
Sequence Information
- Coding Sequence
- ATGGATCTGCTTTCTTGTCGTTTTCAGGTGGATCAGTCACTAAATCTACTGGACAGCCTGAATGCGGCATTGCGGTGCGATGCGATCCAATTCCTGCTGCAAACACTTAAGTGCAAATATCCGGATGCCTGCGACCAAGTCGTTAGGAATCTGTTCAGTCACATAACCAATGATAATGGAGCCGGTTCGGGTTTGGGGCAGCTAGCGAAGACCAAAcaattgcagctgctgctggccgccAAAAAGGAGAAGAACAGAACGAAAACCGAACCGGGCACGGGTGCGGAAGCGGATCGTGAGATTAAGCGGGAAAACGAAGATGAAGCGGAGGGCTCAACCGATTTGAATcaaaattttgagaaaattCTCTGTAAAGAGGAGCTTATGTGCCTCGACGAGGAGGATGAATTCCTcgatgatgacgatgccgATGGTGATGATACGCAAAATTCTTCTTCCCTAAGCAAGCGTCTGCACTTtcacaacagcaagaacaatgTGGATGCCATTGGACCCGGTGATCCCTTGGATTTAATACACACGGGAACGACGACGATTCCTGGCTTGGTTAAGCGTAAATATGGCGCCACTTTTGGTCCTGATGCAGCTTATCACCGCCAGAGGCAACGACTTGGCGATCTTGGGGCCGACGAGAGCAACAGCTATGATGAATCAATAACTGGCTCCAAGGCTGTGGTCAAACGAAAGCGCACCAACAACATGCatctgaagctggagctggaggagtTGCCGGCGCTTTCGCGGCTAGGCGAGGGCTACGTCTTCCACGAGGACAGCCAGTATACGCTGAGGTATCACCATAGCACCGGCGAGTTCAGCGAGCGTGCCTTCAAGGCGCAATTCCGGGCATTGCTGCGCCTGGCTCTGAGCCAGCACCACAAGCCCTTCCTTAAACAGTTCTACGAAAACTTTGTGGTTACCGGTCGGCTGCTGGGCACTACGCCCTCTGCGCGTGTCCTTAAGGAACTGCGTGAGCAGCGACTCGATGAGTGGCGAAGGCAACGCGAGAGGCGACAactggcagcagctgctgcggctgctacGGCCACGCTGCTAGAACAGCGGCGGcaccagcaacaccaacaacagcagcagcagcagctggagcggCAGCTActggaacagcagcaacagcaacaagtgcGTGGACAGCTGCGAGCCATCTCCTTTGGTGATTCCGAGTTGGAATCCGAAACGGAATCGCAGCTATCAGCGGCGCACGAGATTATGAAGTTCGAGGAGTTCATTGACGAGGGTGTAGGCGCGGGTCGTCTCATTGATGGGCTGGAAATGGAACCGGAGATAGATGACATGCTAGCCGGTGCCGGTAGCGTGCTGGCCAGCAGCGTCAGCATCGctggcagcggcaacaacagcaacagcagcagcagcatggccCATGACAACGGCAATGGCATTGGCCTGGGCATCGGTATGGCTGGTGTTCTATTGGACGGCAACAATCATGCGGCAGCACACGAGGCACATCATTCATATCCTCATCTcagcagtggaagTGGGAGCGgtagcggcagcagcagtgcaAATCTTGTGATCAACGGCCTTACGTCAAGCaatagtaacaacaacaataataataacaacaataatggtAGCTTGCTGTCTGAGCAGTTGCCGCTGGAGCATGGGGCAACAAAGCAGACCAAAACGCCATCTCATAATCTGTCCATGTCCACGGAGAACAATCTGAAAGCCAGCCACGGGCAGGACCACGGCCTTGGGCATGGTTCTAGACTGGAGCATAGGCATGGACCAGACACTGGCGACATGCTCATGTCCACCAATGCTATGCAATTGCAGCATAACCAGAATCACTTCAACCCAAGTAATAATCCCTTAACCATGATGGGCGGCAtgatgcagcaacagcagcagcaagtcaatcttcagcagcagcttcaactgcaacaacaacagcagcaacagcttcaacttcaacaacaacagcagcaccagcaacagttTCCCATGTTGAACAATCGCCAGCCGCCGCCGCATCTGGCCGCTTTGTCCAGTCTGAGTGGCGATCCAGGATGTGGACAGTTGAACTCATCACTGGAGTTGGACGACAATGACCTATCTGCCGAGGAGGACGACGACGAGCTGGACAATGAGCTGGATGAGCTAGACGGTGCCGCCAAGCAGCAGCTCATCgatggcggcagcagcagcagcacctctCTCCAGGCGCCGCCGTCGCAGCAAGGTGGCCATACGCCtggcggcagcaacagcaagaaggATAAGCCCAATTATAACTGCCTGCTGTGTCCCAAGTCGTATCGCAAGCGCAAATCGCTGCTGGATCACTACAAGATGCATCCCGGCTACTGTCACGATTGTGGACAGCCCAACGGCAATACGTTGGCgGATATCATCCAGCACAATCGTACGATGCACGTCAAGGAGTTCCCCTTTGTGTGCGAGACCTGTGGCGAGTCGTACTCTCGTCGGCAACAGTTTCATGCGCACGTGGAGTCGCACAATAAGAAGGAATTCAAAACGTTGCCATGCGGCGAGTGCGGCGTGAAGTTTCCACAGAAGAAGCTGCAACAGCATTTCGAGGAGACTGGCCACAAGGCCGATGGCGCCATCTGTGAGGTGTGCGGGGATGAGTTTCCCTCAAAGAATGCCCTCTACCAGCACATCATACGCGTCCACAAGCGGGACAACTTCTTCGAGTGCCACATTTGCCATAACCGCTTCACGCTTAAGGCCAACCTGGAGCGGCACGTCCAGCTGCACACGGAGATCAAGCGCACGTACGTGTGCGATCTGTGCGGCTCCTCCTACTTTACATATCCCGCGCTCAAAGAGCACTATAGCAACGCTCATGTCGATGTTTCCGAGTGCAAGTGCACGCTGTGTGGCAAACGTTTCGGCTCCGCCAAGTCGCTGCAGCGACATCTGCCCTCGCATTCGGAAGAGCGGCCGCACTGCTGTAACTACTGCGATCAGACTTTCAAGTGGAAGACACACTTGGTGCGacacaagcagcagctgcatggCAACCAACCGCCGCCACCCAAGAAGGCCAAGCAGCGCTTTCCCAAGGCCAACGATGAAGCTGATTTGGCGGCACTGCCAGATATGCCGGGACCACCGCcagttaaaagcaaaaaaaccGCTGCCAGCAAGGCAAAGTCACAGGCTGGCGGTGCTGTTGCCGCAGGAAAAGCTGGTGGAGTCGGCGCTACACCAACACCGCCGCCTCCTATATCTACGACTCCGGGCTGTCTGCAGCAGGATCAGTTCAATGCCGCAATGGTTAGCAGCAACAGCTCGCAATCGTCGACGGCATCCACGTCCCAGCACTCAGTGTCCACGAGCGAATCTCAGCAGAATTCCATGTACAGCCAGAGCTTTAGTGGCGATAAGTTGCAGCAGCCGCAGTCACAACAGCAGAATGCGCTGCATCAGCAACACGCTACGCCCACGCCGCCAccaacacaacagcagcagcaagcgcaAGTGCATCATCGCCAAACACCAAACAACAGTGGGGCCAGCGATCTTCACTTGCAGCGCATGAATAGCTTTGGCGGGCCGGAGGGCCAGTTTCATTTTGAGTCGGCTGGCGGGGCTCCAGCAGCTGGCAGCtatcagcaacatcagctgATAACCCAgtatcagcaacaacagcaaccacagcagcatcaCATtgcccagcaacaacaacagcagcagcaacatatgCGCAGTCACACGCCGCAGAGTCCGCATCCTCCGCATACTCCACACCCACAGCATGCCCAGCAGTTGCAACAGCAAGCGCACTTCAATTCGCCGCACCATATGCCGCCAATgcatcaccagcagcaccatcagatgatgctgcaacagcagcagcagcagcaacaacaacaacaacatcgacatAATCAACGGTCGCCTttgcaccagcaacagcatcatccCACACCACATGCTcacccacatccacatccaacGCCGGCACAGcaactccagcagcagcatcagcagtccTCGCACTCCCCGCAACCGGCTCCTCCGGTGGCGGccacacaacagcagcagcagccacagcagtacTTGGGCGATGCCTGGGGCAACATGAGCTTTGGCGGCACTCCcgcaggcagccagccagtgGAGCTCAAGGATAACAGCAAGTTTTATATTGTTGACTCGGCCGAGTTTCTAGGGCTTCCAATGAATGTGGGCGCCTCAGCGCCGGCTGCAcaggcacagcagcagcaacaagcagTCAACaaaccgcagcagcagcaacaacaacagcaacaggagccACCCCTGACCAATGATATATTGGGCTTCCAGCATATGTGGCCACAGGCGCCAGGTCCCTTTGGACAAgcgccacagcaacaacaacaacaacaacagcagcagcaggcacagcAACAGGTGCAACAACAGCCCCAGGTGCAACCAGGACAGGCAAATCAGGGTGTGTCCGCCGACGGgcacaactataacaacattGGCAGCATACTCACGAATCTCATTGACGCGAATCCCACATCTCTGGAGTACAATTTCGATCTGccgccacagcaacaacaacaacagccaccccaacagcagcagcaacaggcggcagtacagcagcaacatggaTATGCGAACGTGGGCAATGTGCCTGGTCTGATGCGGCATGCAGCCGCTGGCAATGTCTACGGTGGCGGTGTCTACGAGCAGCACCACAATGCCCTGGGCGAGCAGCTGGCCGAGAAGCAGCAGAACAGTTTTCAGCCGTACGCCCATGCCCAtgcgctgcagcagcagcaacatttatTGCCTCCACCGCCACATGGCGGCATGGGGGTTGGAGTAGGTGTAGGCTATCCCATGCTTGGCGAAGACTCAAAAGCAGTGCTGCCGCCCATCAATGACTACATGCATcacatgcaacagcagcagctgccgccaCCGCATGGACAACAGCAACCGGATCTAATCTATTATCCAGTGAAGAATGATTGA
- Protein Sequence
- MDLLSCRFQVDQSLNLLDSLNAALRCDAIQFLLQTLKCKYPDACDQVVRNLFSHITNDNGAGSGLGQLAKTKQLQLLLAAKKEKNRTKTEPGTGAEADREIKRENEDEAEGSTDLNQNFEKILCKEELMCLDEEDEFLDDDDADGDDTQNSSSLSKRLHFHNSKNNVDAIGPGDPLDLIHTGTTTIPGLVKRKYGATFGPDAAYHRQRQRLGDLGADESNSYDESITGSKAVVKRKRTNNMHLKLELEELPALSRLGEGYVFHEDSQYTLRYHHSTGEFSERAFKAQFRALLRLALSQHHKPFLKQFYENFVVTGRLLGTTPSARVLKELREQRLDEWRRQRERRQLAAAAAAATATLLEQRRHQQHQQQQQQQLERQLLEQQQQQQVRGQLRAISFGDSELESETESQLSAAHEIMKFEEFIDEGVGAGRLIDGLEMEPEIDDMLAGAGSVLASSVSIAGSGNNSNSSSSMAHDNGNGIGLGIGMAGVLLDGNNHAAAHEAHHSYPHLSSGSGSGSGSSSANLVINGLTSSNSNNNNNNNNNNGSLLSEQLPLEHGATKQTKTPSHNLSMSTENNLKASHGQDHGLGHGSRLEHRHGPDTGDMLMSTNAMQLQHNQNHFNPSNNPLTMMGGMMQQQQQQVNLQQQLQLQQQQQQQLQLQQQQQHQQQFPMLNNRQPPPHLAALSSLSGDPGCGQLNSSLELDDNDLSAEEDDDELDNELDELDGAAKQQLIDGGSSSSTSLQAPPSQQGGHTPGGSNSKKDKPNYNCLLCPKSYRKRKSLLDHYKMHPGYCHDCGQPNGNTLADIIQHNRTMHVKEFPFVCETCGESYSRRQQFHAHVESHNKKEFKTLPCGECGVKFPQKKLQQHFEETGHKADGAICEVCGDEFPSKNALYQHIIRVHKRDNFFECHICHNRFTLKANLERHVQLHTEIKRTYVCDLCGSSYFTYPALKEHYSNAHVDVSECKCTLCGKRFGSAKSLQRHLPSHSEERPHCCNYCDQTFKWKTHLVRHKQQLHGNQPPPPKKAKQRFPKANDEADLAALPDMPGPPPVKSKKTAASKAKSQAGGAVAAGKAGGVGATPTPPPPISTTPGCLQQDQFNAAMVSSNSSQSSTASTSQHSVSTSESQQNSMYSQSFSGDKLQQPQSQQQNALHQQHATPTPPPTQQQQQAQVHHRQTPNNSGASDLHLQRMNSFGGPEGQFHFESAGGAPAAGSYQQHQLITQYQQQQQPQQHHIAQQQQQQQQHMRSHTPQSPHPPHTPHPQHAQQLQQQAHFNSPHHMPPMHHQQHHQMMLQQQQQQQQQQQHRHNQRSPLHQQQHHPTPHAHPHPHPTPAQQLQQQHQQSSHSPQPAPPVAATQQQQQPQQYLGDAWGNMSFGGTPAGSQPVELKDNSKFYIVDSAEFLGLPMNVGASAPAAQAQQQQQAVNKPQQQQQQQQQEPPLTNDILGFQHMWPQAPGPFGQAPQQQQQQQQQQQAQQQVQQQPQVQPGQANQGVSADGHNYNNIGSILTNLIDANPTSLEYNFDLPPQQQQQQPPQQQQQQAAVQQQHGYANVGNVPGLMRHAAAGNVYGGGVYEQHHNALGEQLAEKQQNSFQPYAHAHALQQQQHLLPPPPHGGMGVGVGVGYPMLGEDSKAVLPPINDYMHHMQQQQLPPPHGQQQPDLIYYPVKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -