Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000821.1:977035-980722[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.24 15 6.5 0.2 1 23 231 254 231 254 0.93

2 8 1 62 4.5 2.5 3 20 866 884 864 888 0.92

3 8 2e-06 0.00012 22.4 2.8 1 23 924 946 924 946 0.98

4 8 0.00035 0.022 15.3 2.2 1 21 967 987 967 988 0.94

5 8 2.3e-05 0.0014 19.1 2.6 2 23 995 1016 995 1016 0.98

6 8 0.0032 0.2 12.3 2.6 1 23 1022 1044 1022 1044 0.99

7 8 0.0099 0.62 10.8 1.0 1 23 1050 1073 1050 1073 0.97

8 8 0.005 0.32 11.7 0.2 1 23 1083 1105 1083 1105 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.24	15	6.5	0.2	1	23	231	254	231	254	0.93
2	8	1	62	4.5	2.5	3	20	866	884	864	888	0.92
3	8	2e-06	0.00012	22.4	2.8	1	23	924	946	924	946	0.98
4	8	0.00035	0.022	15.3	2.2	1	21	967	987	967	988	0.94
5	8	2.3e-05	0.0014	19.1	2.6	2	23	995	1016	995	1016	0.98
6	8	0.0032	0.2	12.3	2.6	1	23	1022	1044	1022	1044	0.99
7	8	0.0099	0.62	10.8	1.0	1	23	1050	1073	1050	1073	0.97
8	8	0.005	0.32	11.7	0.2	1	23	1083	1105	1083	1105	0.98

Sequence Information

Coding Sequence: atgcaatgcaatatGAACGATGCTGCCTTTGTGGGCTCCGGCTATTATGGCGGCATTGGCAACCAGttgcagcaacTTGCCCCCTACCCGCCGCTCCCGCTGCCGTCAACAGACCTGTCGTTGTCGCTATCAACGCCCGTTCACAATCACACCTTGGACCACGATCAAGATAGCTTCAACAATTTCTTTGACGACGAGCAGACGTTGCTGTTGAACACGACGCTGTTGCCGTTGACGCTgcctaacaacaacagcagcaatatcaATGAAAACGCAGTCAGTGGCAGTCGTGGTGCCCATAAAGCTTCTCCAGATGTAGAAAGCAGCGCTTCGGCGCCGGCCAACAACTGCATTCCTTTTGTCCAGATACACACCACGgatctgcagcagcagctgcagccggAGAAGAGTTACCGCAATGCTTTCAGGCGCAAGACAGCCGAGATCAAGTCGGAGGCGGAGCTCATCAAATTGGAGCTTGCTGAGGCGGCAGCCAAGGATCGTTTAAATGCCACGCCAACGCCGCCAATCCGTAATTCCAGCTGCCACAGCGTGGAGGGCAAGACGAGCAATGATGGCTCCGATACGGGCACTTTACACAGATGTCCCAATTGCCCCTTCCTGACCCTGTGCACAGTGAAGGCTCAGACGCACATGGCCAGCTGCTTTGGGGCGAATGCCCAGAGCCGGCATCAGTGTCCCGgttgtgaaaatattttctatagcaTTGAGGTCCTGAATTTACATCTGAGCCTGGATCATCAATTGGAAGCCCATGAAATTTCCGCACTTCTGACGGGGCAGTCGCAGTCCCTGGATGTGCAGCCTACAACGACTTCCAATCTGCCGCCCAAGAGTCGCATCTTTATTAAGAATGTGGATTGCCTTCGAGAGccacagcaggagcaggaggtgCACTCTCTGGAAGATTTTCTGCCACTGCTCCCGCAggatggcagcagcaacaatggcaaccTATTGGATCTGCTGGAGGGCGTGTCAGTGGCCGAGGCGGTGGATCAGACGCAGCCAGCGACTGCGCCCCTGCCAAAGCCCGCCCAAAAGATTTCCATCAAGAGTGTAGATGTGCTGAGAGAGCCAGCATTGCTGCCCTTTGAGTTTCAGATGCCCAACGAGGATCAACATCTGTCCATGCTGGCGAACAACAACACCCTGGATGTTGAGCTGGTAGGCGTGGAGCCGGAGAAACCGCACCAGCCGAAAATCTACATCAGAAATGTGGATATACTAAAAGAGCCCATGGTGCTGCCTGGCATGGGAGGCTTCAATGAAATGGGTACCAGTGTGGCCACCGATGTGAGTGATGTCTACCAAACCGGCAGCAGCACAACTGATACGCTGCTTACACCAACGGGACCGGGTCCGCTGCCTAGTTTTGAGCCCACGTTGGCTCCGCTGGCTAACATGTGCACAGACGCCTTCTCCTTCGACTCGGTGCTcagtgcagcagcaaatggaaacaacaatgccaacaacaacaactttgtcCTGGAGAGCACCCGTTTCAGTGCCCTCGACTTGGACTTTTCCGTAGATATGGACTATCAGCCGAGTGTGGCGCCATTGTTGACAGAGGCGACACCGCCGCCACCCAACATTCCAGTTCCTGTTTCTCAGCTTGCACCGCCGGTTGATATTAACTCTCagctgcaacactttgtgcCCGTTGCCCCCACAACACTTCCCAAGCAGAAAATCTTCATCAAGAACGTGGACATCTTGAAGGCCCCGCAGCGGGGCACCTTGCATCTGCGCACTGTGGACGAACTCAATCTCATGAATCGCAACGAGGTAGAGAACCTAATTGTGCCACATTTGGAGCCGATCCTGGAGCTGCCTGTGGAGCAGCCTCAAGTGCAAGCACCAGCACAGCTGGAACAGCAGCTGGGCGACTTCCATCCACCGTTGAGCAATGGGTGGCCAAGTGAGGAGGGCTACGATTTAGCGGATGATCTGGAATGCTGGCATTGGGTGGAAGAAAGTGTGCCAGAGACTATAACACTGCCAGCGGGCAACGAGGATGCACATGCTCCACAATTGGAATCGTTGACTGTGAGTGGCAATGACTTCCCGCAGCTGTATgttccaccaccaccaccgccaacaacaacagcgccaTCCTCGCCTCCAGCACCACCGCCGCTGCCGGCACCAGTGCAAACTGGTGGTTCGGTTCCTCCTCTGGTGCCAGTCACCGTCTCTGGTGGTGGCACGGTCAATTCAGCAACAAATCTGAGCAGCTTGCCTGTGCCTCCGCTTGTGCCACTGGCAGCGGAAGCCGGAACTGGCTCAATAGATAAGCCGGCCAGAATATATGTTGCTAATAATCTGCTGCCCGCTGCAGTGGAGCCGCCTCTGCCGGGCGGCACATCGGTTAGGGGTCGTCCCTATGGTGCCAAACAGGCAGGCGCTGGAGGAGCAGCGAAACGACGTGCCCCTGCAGGCGGTTCGCTTGTACCAGAGGGTGGCAAATGTCAAGTGGAAGGCTGCATGTTCCGCTTCAAGTCCCCCGCCACCTTGGACTACCATGGACGCTGCCATAATGGGGCGCTCAGCTCCCCACAGCCCATGATTTGTCCGGAGTGCAAATCAAAGGAGTTCAGCAATTGGAACTGCCTGCACACGCATTTGTGGCGGACCCATCAGATCGACATGGAGCTCTATTACTGTCAGCTGTGTAGCTTCAAGACGCCCATCTACTCGCGGCTGGTCAACACCCATGCCAAGATCCACTCGGAGGAGCGCAACTACAAATGCGAGCAGTGTGGTAAGGGGTTCAAGAATACCAAACAGCTGAAGAATCATCGCCGGCTGCATCGCACCCAGGGACTGGGCATGGGCAAGCCCAACGATCAAGAAAATGCTACTGTTGCAGTGCATCGCTGCGAGGACTGCGGCGCCGCCTTCAAGCAGCGCAAGACATTGCGTGAGCATCTGTGCAAGCAGCGGAATGAGCAGCCCCAGTGCAGCACCTGCCAGCGCATCTTCAGCTCCAAGAATAGCCTCAAGCTGCACATGCGCAGCCATCAGACGAGCAAACGCTTCAAGTGTGATAAATGCGAGTACGAGTCCAACGACCACAACGCCTTCCGGCGTCACATGGCCACGCATGGGGAGCGCAAACGTTACGCCTGCCCGCATTGCGATTTCCGTGCCATCCAGAGCACGGCCTTTCGGGTACATCTACAGAAACGCCATCCGGAACAGGAGCTCTCCTCGATCATTTACAAATGCGATGTCTGCTCCTTTTCCAGCATTAATCGCGGTCTACTACTGGTCCACCAGGCCAAGCACGAGGCGACGCCCAACACCAGCTCCATGGAAACAACCGCTGATTCCACCTCCCAATCCCCAATCAAAGTGGAGAGCAGCGTGCTGCTGCCACATTCCAGTATAAATGCCAAGGAGTCAGCACAAGCATTTCTCCAACCATCGACTGGTGGTGGTCCATTGCAGGCCACCTAG
Protein Sequence: MQCNMNDAAFVGSGYYGGIGNQLQQLAPYPPLPLPSTDLSLSLSTPVHNHTLDHDQDSFNNFFDDEQTLLLNTTLLPLTLPNNNSSNINENAVSGSRGAHKASPDVESSASAPANNCIPFVQIHTTDLQQQLQPEKSYRNAFRRKTAEIKSEAELIKLELAEAAAKDRLNATPTPPIRNSSCHSVEGKTSNDGSDTGTLHRCPNCPFLTLCTVKAQTHMASCFGANAQSRHQCPGCENIFYSIEVLNLHLSLDHQLEAHEISALLTGQSQSLDVQPTTTSNLPPKSRIFIKNVDCLREPQQEQEVHSLEDFLPLLPQDGSSNNGNLLDLLEGVSVAEAVDQTQPATAPLPKPAQKISIKSVDVLREPALLPFEFQMPNEDQHLSMLANNNTLDVELVGVEPEKPHQPKIYIRNVDILKEPMVLPGMGGFNEMGTSVATDVSDVYQTGSSTTDTLLTPTGPGPLPSFEPTLAPLANMCTDAFSFDSVLSAAANGNNNANNNNFVLESTRFSALDLDFSVDMDYQPSVAPLLTEATPPPPNIPVPVSQLAPPVDINSQLQHFVPVAPTTLPKQKIFIKNVDILKAPQRGTLHLRTVDELNLMNRNEVENLIVPHLEPILELPVEQPQVQAPAQLEQQLGDFHPPLSNGWPSEEGYDLADDLECWHWVEESVPETITLPAGNEDAHAPQLESLTVSGNDFPQLYVPPPPPPTTTAPSSPPAPPPLPAPVQTGGSVPPLVPVTVSGGGTVNSATNLSSLPVPPLVPLAAEAGTGSIDKPARIYVANNLLPAAVEPPLPGGTSVRGRPYGAKQAGAGGAAKRRAPAGGSLVPEGGKCQVEGCMFRFKSPATLDYHGRCHNGALSSPQPMICPECKSKEFSNWNCLHTHLWRTHQIDMELYYCQLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNTKQLKNHRRLHRTQGLGMGKPNDQENATVAVHRCEDCGAAFKQRKTLREHLCKQRNEQPQCSTCQRIFSSKNSLKLHMRSHQTSKRFKCDKCEYESNDHNAFRRHMATHGERKRYACPHCDFRAIQSTAFRVHLQKRHPEQELSSIIYKCDVCSFSSINRGLLLVHQAKHEATPNTSSMETTADSTSQSPIKVESSVLLPHSSINAKESAQAFLQPSTGGGPLQAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -