Hdun001506.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- ush
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000057.1:1146638-1163893[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0084 0.52 11.0 0.0 1 20 208 227 208 229 0.90 2 9 0.00036 0.022 15.3 0.8 1 23 283 305 283 305 0.98 3 9 0.064 4 8.2 1.0 2 21 344 363 344 364 0.92 4 9 0.062 3.9 8.3 2.9 2 21 755 774 754 775 0.93 5 9 0.012 0.72 10.6 0.0 3 21 827 845 825 846 0.91 6 9 0.0083 0.52 11.0 0.0 2 23 923 944 922 944 0.98 7 9 0.0049 0.3 11.8 1.3 1 23 950 972 950 972 0.99 8 9 0.0023 0.15 12.8 0.8 1 23 1033 1056 1033 1056 0.96 9 9 0.52 33 5.4 0.5 2 20 1172 1190 1171 1192 0.91
Sequence Information
- Coding Sequence
- ATGCTCAGCAGCAATTCAAAAGGTGATTGTTCCGATACCGCCGAAGAGATGACCGTTGACAGCAGAGATTCCAAAGATTTGGCCGCAAACGAGCTGGCCGAGGAGAAGCAGCTGGGACTTGAGCTAGAGGATCAGGCCGATGAggagcagagccagagccaagtAGAGaaccaaaccaacaacaacaacaataacaacaacgccTCCGACACTGATTTGGATCAGGAGATGGCAAGCGCAGAGACTAAGAGCATTGTGCAACCACACTCAGTGGAAGCATCAGCGGAATTGCAACTGGCCGAGGCCAGAGCGCCCCACAATAACAGCTCGAATCCTTCAACGCCCGGACGCAGTCCAAGTCCGAAGCTGGTGCCCAAACTGGAGCAACCCGAACAGCCAGCCACGCCACCCTCACAAACTCCTTCGCCAGCTCCATCTCTGTCGCCACCCGCACTGGCGCTGCCCAAACTGCGTCTGAATGCTCTGCTAGCCTCCGATCCGGCGTTGAAGCCAGATGCTAAGGAACTGAGCCTGCCAGAGCCACGACTGTTGGCACCGCCGCCGCTGGCCAAGCCAGAGCCGCTGCCTGAGCTGGTGGAGCCGCTGCTCAAGCCGGCTCGTTTCATGTGTCTGCCCTGCGGCATAGCCTTTAGCTCACCCTCGACCCTGGAGGCTCATCAGGCCTACTACTGCTCCCATCGCAACAAGGAAGCAGACGAAGAGCAGGCTTCGGGTGACAAGGCAGCAtccactgctgctgcaggcGGCGGAGGCGGAGCTGGTGCTGGCAACACGGCTAACAGCGGCTCTGAACCGCCGGCCAAGGTGGCCAGAATTGGGAAGCAGTATGCCTGCACCCAGTGCTCTTACAGCGCCGACAAGAAGGTCTCACTCAACAGGCATATGCGCATGCACCAGACTTCGCCGGCGCCCAGCCTGACCAGCCATGCCAGCTTGCCCTTGCCCAGTCTGGCGGCCAACGGGGTGCCTGCCTCGCTCGAGGAGAGTCCTAGTCAACAAATCGATCGCTACTGCAGCGACTGTGATATCCGgttcaacaacatcaaaaccTATCGTGCCCACAAGCAGCACTATTGCAGCTCCCGTCGTACCGATGGCCAGGCGGCGGCACAAGGACAGCTCACGCCCAAGACCGAGGCAGCCGTTTCAGGCGTTGGAGCGggcggagcagcagcagcggcagcagctgctgttgccgctggcAAGCTGAGTGGCGCCCATAGTCCGCAGTCGCGCAACAAGACCCCCACGCCTGCAATGATGGCTGCTGCACAAGCTGCCGTTGCCGCGGCCGCCGCCTCACTGCAGGCACCGCCTCCGCAGCCCTTCCTGGCGCTGCCCACAAATCCCATTATCATAGTGCCCTGCTCTCTCATACGGGCCGCCAGCTTGATTCCGGGACCACTGACCACCTCCACTTCTGGCATTGTGAATCCGGAATCGACTTGCTTCACGCTGGACAATGGTGCCCTCAAGCCTTTGGCCACGGCTTTAAACATGAATGCGCTGGTTGGCAATGCCGCCACAACGCCCACCGGTAATCCCTTACCCATGCCCGCCCTGGAACCCGATCGACTGCCCCCGGCCGTCGCAGCGTCAGCTGGGGAAGCAGAACCAAAGAGCAGTCCGCCAGAGCCTAAGCGCAAGGAAGCCGGCGGCGGTAGTCGCGAATCTGGTGCCCCACTGGATCTCTCCCTGAGACGCTCACCCATCTCGGCGCTGTTGCAACGTCAGCGCTTGGTGCGGTCAGCCGCTGCATTGCTGGTGGACGCCGAAGAGGCTCTACTGGGACCAGGCAAAGAGAACATGGAAGGTGGCCCAGGTGGTTGCATTACACCGGAGCAGATTGTATGCGCCCCCTCGCTGCCCAGCAGCCCCTCCATGAGCCCCTCCCCGAAACGGCGAGCCATCAGCCCTAGGAGTTCTGGTGCTGGCAGTGCCTCCTCTATGTCACCACCAGCTTTGAATGTGGGCGTGCCGCATCTGCTAGACAATCTGCCCAATCTGCCGCCGCTGCGCTCCATGCTGCCCGCCGATTTTGCTTTGTCGGAGTCGTTGTTGGCCAAAACCAATCCTGAGCTGGCATTAAAGCTggctgctgcagcggcagctgcagTGGCTGGCAGTAGTTCCGCGGATCTGGCCGGCAAACTGGGTTTCCCAAGTCCAGGTGCGCCCGCAGCGAGtgccgcagctgctgctggtggccaACCCCAGATCTATGTGAAGCAGGGCGTGTCCAAGTGCAAGGAGTGCAACATTGTCTTCTGCAAGTATGAGAACTATTTGGCCCACAAGCAGCACTACTGCTCTGCCCGCAACCAGGAGGCTAGCGAGGGCGATTCCAAGGCCTGTAACACGCCGCCCAGCTCGACAGGCGGCGGCGTTGGTGGAGCCGGTGTGGCTGGAGCCGGCTCAGCGGTGGAGACCACACCTGTGGCCTACCAGCAGCTCATTTGCGCCGCCTGCGGCATCAAGTACACCTCACTGGACAATTTGCGTGCCCACCAAAACTATTACTGTCCCAAgggtggagcagcagcagctgctgctgctgcagcggtGGATAATGCTCAGTCGCAGCTCCCGCCGGCCAAGGAGAAATGCTCCAAGTGCAAGACTTTGCACGAACCGGGCTTAGCTTGCCCGCCTCCACCGCAGGCCGCCaccccagcaccagcagccgGCAATCCTAACCAGAGCCAGTCGGCCTCGACACCCACAGTCTCCAGCGGCGGCGTCAACAAATGCCCCGTCTGTGGTGTGGTCAGTCCAACGGCAGCGCTGGCCCGCAAGCACATGGAGATGCACGGCACTGTGAAGGCCTTCCGTTGCAGCATCTGCCAGTACAAGGGGAACACGCTGCGTGGCATGCGCACACACATTCGCACCCATTTCGACAAGAAGACCAGCGATGTTAATGAGGAGAACTACATGACGTGCATCTTTGAGGAGGACGCCAActcagcagtggcagtggccgGTGCCGTGGGCTTGGGACTCGGTGTGGGCATGGATATGCCAGCTGTTGTCCAAGATCAGCAGCTGGAACAGCACCAGAGCCCCAGTCAGCTCTTCAATTGCGACTACTGTAGCTATGCTTCCACCTACAAAGGCAATGTGCTGCGTCATATGAAACTTCTACATCCCCATGTGGCCATCAGTTCGCCTTCCATTTCGCCCGAGTCGCGAGACACAGAAACCAATGCTAATCCTCTCACAGCCGATGTGAACGTCATTAATGGCGAAGCCGGCAACTTGCCCAGCTTCCATATCAAAGCGGAGCCTTTGGATCCAACAGTGAATCTTGTGcatgaaaacaacaactcaCCCATCGGCACGCCGCTCAGCTTAAGTCTCAGTCATGCCCATATCAAGGCTGAGCCCTTGGATTCAAGCCTGGGCATTGATGTGTCACCTGCTGTGCCCGCTCTGCCGCCGCCGGCTGCCTCGCCCCTGGGTCCCAGCACCGCTGCCGAGGCCATGAAGAAGTATTGCTCCACCTGCGACATATCCTTCAATTATGTCAAGACCTACCTGGCCCACAAGCAGTTCTATTGCAAGGGCAAACTGCAAAAACGGCCCGAGGCCAATGACAGTCCCAGTCCCAATCATGTGGCGGTAGCTGGCGCCTCCAGCGAGCTGCTCTTGCTGCAGAAGAACAAGGAGAATCTGCAGGAGGCGGCCATTTGA
- Protein Sequence
- MLSSNSKGDCSDTAEEMTVDSRDSKDLAANELAEEKQLGLELEDQADEEQSQSQVENQTNNNNNNNNASDTDLDQEMASAETKSIVQPHSVEASAELQLAEARAPHNNSSNPSTPGRSPSPKLVPKLEQPEQPATPPSQTPSPAPSLSPPALALPKLRLNALLASDPALKPDAKELSLPEPRLLAPPPLAKPEPLPELVEPLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRNKEADEEQASGDKAASTAAAGGGGGAGAGNTANSGSEPPAKVARIGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSLTSHASLPLPSLAANGVPASLEESPSQQIDRYCSDCDIRFNNIKTYRAHKQHYCSSRRTDGQAAAQGQLTPKTEAAVSGVGAGGAAAAAAAAVAAGKLSGAHSPQSRNKTPTPAMMAAAQAAVAAAAASLQAPPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIVNPESTCFTLDNGALKPLATALNMNALVGNAATTPTGNPLPMPALEPDRLPPAVAASAGEAEPKSSPPEPKRKEAGGGSRESGAPLDLSLRRSPISALLQRQRLVRSAAALLVDAEEALLGPGKENMEGGPGGCITPEQIVCAPSLPSSPSMSPSPKRRAISPRSSGAGSASSMSPPALNVGVPHLLDNLPNLPPLRSMLPADFALSESLLAKTNPELALKLAAAAAAAVAGSSSADLAGKLGFPSPGAPAASAAAAAGGQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEASEGDSKACNTPPSSTGGGVGGAGVAGAGSAVETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGAAAAAAAAAVDNAQSQLPPAKEKCSKCKTLHEPGLACPPPPQAATPAPAAGNPNQSQSASTPTVSSGGVNKCPVCGVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTSDVNEENYMTCIFEEDANSAVAVAGAVGLGLGVGMDMPAVVQDQQLEQHQSPSQLFNCDYCSYASTYKGNVLRHMKLLHPHVAISSPSISPESRDTETNANPLTADVNVINGEAGNLPSFHIKAEPLDPTVNLVHENNNSPIGTPLSLSLSHAHIKAEPLDSSLGIDVSPAVPALPPPAASPLGPSTAAEAMKKYCSTCDISFNYVKTYLAHKQFYCKGKLQKRPEANDSPSPNHVAVAGASSELLLLQKNKENLQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -