Hdun000583.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000030.1:1488014-1495419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0042 0.26 12.0 1.9 1 23 155 177 155 177 0.97 2 13 7.4 4.6e+02 1.7 2.8 1 23 183 206 183 206 0.94 3 13 9.4e-05 0.0059 17.2 4.9 1 23 392 414 392 414 0.98 4 13 1.4 90 4.0 1.9 1 23 420 443 420 443 0.92 5 13 0.0015 0.096 13.3 1.9 3 23 824 844 823 844 0.92 6 13 0.24 15 6.4 0.8 1 23 850 873 850 873 0.95 7 13 0.0054 0.34 11.6 0.8 1 23 953 976 953 976 0.97 8 13 0.0031 0.19 12.4 0.3 1 23 1182 1205 1182 1205 0.90 9 13 5.7e-05 0.0035 17.8 2.6 1 23 1217 1239 1217 1239 0.98 10 13 0.0001 0.0064 17.0 1.9 1 23 1244 1267 1244 1267 0.96 11 13 0.0011 0.07 13.8 6.1 1 23 1273 1298 1273 1298 0.97 12 13 0.00059 0.037 14.7 0.6 1 23 1303 1325 1303 1325 0.96 13 13 0.015 0.96 10.2 0.7 1 23 1331 1354 1331 1354 0.92
Sequence Information
- Coding Sequence
- ATGGCCAGCAGCAACTACTACCACAATCACAGCAAAAGGATGAGAATGAAAACGGAGCCAGAAGTGGACTACAGATTTGCTTGTCGCTGTTGCTTGAAATCCGACGCGGAGTTCCATAGATTGGATTCGATAAAGGTGCCGCGCAATCTCGATCTGGACATAGGTGATGGCGGCGTTGAGAAAATACCACTAATGCGTTGCTTGCTGTTTTGCATACGCGTTGATAATAACCCAGAATTGCCTCAGTATATCTGTGTGGAGTGTAGCAAGACTCTGCAAATAGCATACTATTTCTTGCAGAATGCTTTACAGTCTCACGAAGTACTCTGCCGCAAGTTATGTCCAAGTAAGCCGAAGCGGTTTGCAGGGACGACAGCGACGCCGCGCCTAAATGGACAGCAAAGCGCTGGTGCTCCGACTGAGCGTGTCGAGGATGACGCCCGCAATTCTAAGTCGGTGCGACATGAATGTAAAATATGCGGTATAACTATACACAATCGACTGGAGCTAAAACAACACATACGGCTGCACACGGATTCGGTTGCCCATAATTGCAAACTGTGCAAGTTTGTGACGCTCAAGCAGCGTCAATTGGAGGAGCATTATCAAAGGGCGCACAAGATAAGCAGCGCGCAGTTGGAAAAACACTTAAAAGGCAAGTCAGAATTGGTTAATGCAGAGCCGAGACCCACACCGGGCGATTCTGATAAAGTGCAGACTACTGTGTGCACATTGGAGGACATGGAGCTATTGATTCCCCCGCTGCTGATTCCAGAAGATCTGGCCCAGCCGCTTGCAGAAGACGATACAGTGACGAACATTGATCAGCAATTAGCAGCCCCCGTGGGTGATGCATATGTGGATGGTTCAAGTGAAGATTCGGGCACTGCCGTAGGATTCGAGGCAACAAACAATATGAGCGTAGGCACGGAGTACCTTGTCATGCCGGATGGCTCCCTGCAGCAAGTAACTGACGGTGGGGGAGTGGTCTTTGAGTACATCGATGACAGCAAAGACAATCGACCGCGGCAAAATATGGGTCTGAAAACTTTGTTTGGCGACGACGACGCCATGGAAATCGACGTCAATGAGCTGATTGTAGAAGAAAGGCTTCCCGAAGTACCATCGAAGGTTACGCCCAAGTCGCAGACCCTAGTGGGACCCAAGCTCCAGCACAAGTGCAAGCAGTGCCCCAAATCCTTCACCACTCTGCAGCGCCTGAAATCTCATCAATTAACCCACAGCCATTTGCCGAAATTCCACTGTGACTTTTGTGGCTTCTATGCGCTGCGCAGCTCCGATCTCATACTGCACTACAAAACAATGCACAACAAGAGACATAGCCAAAGCCAGGATTCCAAAATGATGACATCTACCGTGCTGGATGATAGTCGAATCTTCTCCTGTGATCTGTGCTTGTTTGAGACGCAGAATCCGCGGGCATTGAGCTCGCATTACAATTGCAGGCATGGTATGGAGCCATCGGAGGTACAACTGCGGCCCAGTTGGTGCACTGACACGCAACCTAAGCCAGTTGCCGGAACAGTCAATAATACTGGCGCCGATGGTTCTAGCCAGCCCATAACCACTGAGCTTCCTCTGGGTATACAATATCCACCAGCCATAGCGACAACAACAGGTCAAGTCTTAACCACATGCAGCACAGACacagagcagcagctgcagcaccaccaccagccaATGGCCACCACAACGGCCACAATTACTCCAAGTGGTGATATCAGCGTGGTTATGGATGCCACGCCTTTGTTTTATGCACCTACAGAGGCGATGCCAGTGGTAGAAGAtgacgcagcagcagcaatcgctTCAGCTGCGACAGAGTTGGTTGATCCGGAGGTGGCAGCATCCGTGGTTGTGGCACCTCCATCTGTTGTCgtcaagagcaacagcaatcacCTTGGCGTATTTCCACAAATCGCAGTtagcagcaacagtaacaacaacatcaacaacaacagcaacaacaacagcaacaacaacagaaacaacaacagcagcagcaacaaccacaaccacaacagcagcagcccgCACGTCAACATGGAGCCGAGTGGAATGCCTTTGAACGTGGCCGACAACTCCAGTGCGAATACCTCAATGTTTGGTGACATGCAGGACTTCATAGACAATACGGATGTGGCTGCCATTTGCACTATTCCAGCCGATGATATGCCCGTGGTGGATGGCGATGATATTGttattgataataataatataagcCTGGACTTTGATGCGGAGAATCTATTTGAGGACTTTGAAGAGGATGAGGATAATGAGAACGGCGCTGAGGACGATGAGTTTGGTGAAGACGATGAAGATGGCgagaatgatgatgaaaaCGATAATAATGAGGCGGCCACCGATCAGAACCTCTTACTAACCagcgatgatgacgatgtgGATGATTTCGATGATGAGCAATCGAAGAATCTGCAGAAACCGTACTGCATCTACTGCAACAAGAAATTCACCAGCCAATATAAGTTCGAGAATCACATGTTTGTGCATCGGGGCTTGGCGCCCTATCGCTGTGAGCTGTGCACCAATCTCTATAACATGAAGCGTCTACTCATACGGCATTACAAAGCCGTACACAAGCGCATGCCCACGCGCGATATGGTGCAGGCCAAGGGCGACAAGGTCTCTGTGGCATGCACCAATATTGAGAGACTGGAAATCAATCAGAATAAAACTCCAGTCTTAATGTGCGCCAAATGTCCCTTCGAAAATGAATCGGATTTGGAAATGCGGAAGCATTTGAATGCTCATCATGGCATCAACGAAGGTGTGTCCATCCACGCCAACGAGGTGTTTATCATACGAAAATTGCCTTTCGAGTGTCCACGGTGTATACGTTCGTTTGCGGCAAAGCGGACATTGACCAGACATCTGCAGCGCAGCCATTTGGTGGACACCATTATAGAGGTGCATGCTAACGATGCCACATGCACCTCAAGCTCTTCAggcactacaacaacaactaccgcgccaacaacaacagcaactgtgCCAGAGCCTGCCGCTATAGTGGATCAATCGGAGCATATTGATGTGGGAACTGGCGGCGAATGCGACAACATTGAGGTGACCATAACCACAGCAGCAGGGGAAGCGGAAGAAGTGGCTAACAACACTACAACCGCAGCTGATAATGCAGAACccacaataacaacgacaacaatgccatcaacaccaacaatacctacaataacaacaacccaAGAAGGCTCTCCCATGATAACGccctttgattttgatgactTAATGGCCACACCACCGCCTCCACTgccatcaacagcatcaacaccTGTCCATGCACCAGCACCAGTACCatgcacaagcacaagcacccCTGATACCAACGTAACATCCATTTCCACTGTACCCACCACTGTTCCACCCTCCCACACATCATCTCCTGCACATTGCATGCTAAATGGCAGCGATAAACTGTTAACTGCCGCAATGGAGCCATCACCGATAAAGGATTTACGTTCACGCAATACCCGCACACCCATGTATGTCTGCAAGATATGCAATCGAAGGTTTGATGAGCTTGGCAAGCTGGTGCGCCACGAAACGGAGCAACATTCCATCCATCAATCACCACGGCTGAATTTCGAGCATCAGTGTGGGATTTGCAATACGACCTACCGCACCCTTACGTTGCTAAGAATCCATATGAAGCGGCATATGACCAGAAAGCATCAGTGCAAGCAGTGTCCCAAGGCATTTGTGCAGCCATTGGATCTGCACAAACATATTAAAGCGCAGCACAGCAAGGAGCCGCAGTTCAAGTGCACGATAAATGGCTGCAACAAGACCTTCAACTACAAACATCATATGGTGAGGCATCAGAACTCGCAGCACTTGAATGTGCGGCATGTGTGCCCTGTCTGTGGACGAGAGTTGGCAAGCAGTCTGCATTTAAGGAACCATATGACCGGACATAAAGGTGGGCATGCCTACAAGTGCCCCCGTTGTGATAAAACCTACTTAAGGCGTGGACCCCTGCGCCAGCATGCACTCCAATTCCATAAATGGAATATGACCGACGATGAAATCGCCGAAGTTTATCGTTTAAATGTCGGCTATACAAATCCACACGATATCAAAGTCCTCACAACTAATGGAGAACTTATGCGACGCAAGGAGCTGGAAGCTAATGCCGTGAAAGGGGAGACCGAAGAAAACGATTAA
- Protein Sequence
- MASSNYYHNHSKRMRMKTEPEVDYRFACRCCLKSDAEFHRLDSIKVPRNLDLDIGDGGVEKIPLMRCLLFCIRVDNNPELPQYICVECSKTLQIAYYFLQNALQSHEVLCRKLCPSKPKRFAGTTATPRLNGQQSAGAPTERVEDDARNSKSVRHECKICGITIHNRLELKQHIRLHTDSVAHNCKLCKFVTLKQRQLEEHYQRAHKISSAQLEKHLKGKSELVNAEPRPTPGDSDKVQTTVCTLEDMELLIPPLLIPEDLAQPLAEDDTVTNIDQQLAAPVGDAYVDGSSEDSGTAVGFEATNNMSVGTEYLVMPDGSLQQVTDGGGVVFEYIDDSKDNRPRQNMGLKTLFGDDDAMEIDVNELIVEERLPEVPSKVTPKSQTLVGPKLQHKCKQCPKSFTTLQRLKSHQLTHSHLPKFHCDFCGFYALRSSDLILHYKTMHNKRHSQSQDSKMMTSTVLDDSRIFSCDLCLFETQNPRALSSHYNCRHGMEPSEVQLRPSWCTDTQPKPVAGTVNNTGADGSSQPITTELPLGIQYPPAIATTTGQVLTTCSTDTEQQLQHHHQPMATTTATITPSGDISVVMDATPLFYAPTEAMPVVEDDAAAAIASAATELVDPEVAASVVVAPPSVVVKSNSNHLGVFPQIAVSSNSNNNINNNSNNNSNNNRNNNSSSNNHNHNSSSPHVNMEPSGMPLNVADNSSANTSMFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEDFEEDEDNENGAEDDEFGEDDEDGENDDENDNNEAATDQNLLLTSDDDDVDDFDDEQSKNLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKAVHKRMPTRDMVQAKGDKVSVACTNIERLEINQNKTPVLMCAKCPFENESDLEMRKHLNAHHGINEGVSIHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEVHANDATCTSSSSGTTTTTTAPTTTATVPEPAAIVDQSEHIDVGTGGECDNIEVTITTAAGEAEEVANNTTTAADNAEPTITTTTMPSTPTIPTITTTQEGSPMITPFDFDDLMATPPPPLPSTASTPVHAPAPVPCTSTSTPDTNVTSISTVPTTVPPSHTSSPAHCMLNGSDKLLTAAMEPSPIKDLRSRNTRTPMYVCKICNRRFDELGKLVRHETEQHSIHQSPRLNFEHQCGICNTTYRTLTLLRIHMKRHMTRKHQCKQCPKAFVQPLDLHKHIKAQHSKEPQFKCTINGCNKTFNYKHHMVRHQNSQHLNVRHVCPVCGRELASSLHLRNHMTGHKGGHAYKCPRCDKTYLRRGPLRQHALQFHKWNMTDDEIAEVYRLNVGYTNPHDIKVLTTNGELMRRKELEANAVKGETEEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -