Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: SCRT1
Assembly: GCA_037043425.1
Location: JBAMBM010000834.1:3218910-3222026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.7e-07 1.7e-05 25.1 1.5 1 23 462 484 462 484 0.99

2 5 0.00082 0.052 14.2 0.3 2 23 494 515 493 515 0.97

3 5 1.8e-05 0.0011 19.4 0.4 1 23 519 541 519 541 0.97

4 5 6.1e-08 3.8e-06 27.2 0.6 3 23 549 569 547 569 0.98

5 5 8.7e-05 0.0055 17.3 2.2 1 21 575 595 575 596 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.7e-07	1.7e-05	25.1	1.5	1	23	462	484	462	484	0.99
2	5	0.00082	0.052	14.2	0.3	2	23	494	515	493	515	0.97
3	5	1.8e-05	0.0011	19.4	0.4	1	23	519	541	519	541	0.97
4	5	6.1e-08	3.8e-06	27.2	0.6	3	23	549	569	547	569	0.98
5	5	8.7e-05	0.0055	17.3	2.2	1	21	575	595	575	596	0.94

Sequence Information

Coding Sequence: ATGCCGCGCTGCTTGATTGCCAAGAAATGGAAGGCCTACCCCTGGCTGGATCGCACAGAGGACAACACACAGGCGACGccacaacatcagcagcaccaaACCACAACTTCTTCCAGAGATGAGGATCCGTCGCTAACAAATCTGAAATCGCGTCGCTCCACTCTCGACGATGATGAGGAAATTGATGTTGTTGGCGACAAATTCTTGACCAAGTTGGAAAAGCAACGCACAACAATtgcctcagcatcagcatcatcagcagcgccaccagcaacagcatcagcaacagcagaagccaCAAACAACGAGAGcacaacaacggcaacggcaacggcaacaacaacggccaAATGCTGGGGACCCAGTTCACCAACGGCAGGCACCACGGCGCCCAGTCCGCCGCCCCATTCGCCGGAGGCAGCGACGCGAGTAGCCAGCAATGTTTACAATGGTTACACCCGTGAACTTTCCCCGCTGCACTATACCGCGTACCTGCCCAGAATGGAGAGCGAGATCACAGTTATACGTGCCGCTGCCACAGCGCTCGTGGCTGCCGCATCTGTTggagagcaacagcaacagcaacaacagcagcaacatttggCTGCCTATCAGACGCCTCCCTCGTCCACCACATCTTCGCCGTCGTGCTCGCCCAGCGGGGCTGGTCAAGGAGATCGCTTTAGTCCGTTGTCTGGAATGGGCATACACATCAAAACGGAGGCATCAGGCCAGACGTCCAGTGAGCGTAAGTGCTTCAGCAGCACCGGAGCTACTTTGTCGCTGCCGCCTAAGAAGAAGGACATATACAGGCCCTATTCATTGGATGATAAGCCTGCTCATGGCTATCGTCGGCGGATTCCAGCCGAGGAGGACTTGCATGCCGCTCATGCCATCCTCGACCTGAGCGCCTCCACTGCCTTCCACCCGCCTACGCAGCCACACCAGCTGCATCAGTTATCactccagcaacaacagcatcatcatcatctgcctCTGACCCACGCCCATACCGTGCCGCCTTTGGAGGCGCATGCGCATGTGCGGAGCACGTCATCGATTGCCGAATTGGCTGCTGCAGCCAGCGTGGTAAACGAACAACGCCCCTTGAGCAATGCCTCCAGCAGCGCCAGCATCCACAGCCAGCAGATGCCCAGCAGCCCagccagcagtggcagcaacgTGCAGAACGAGAACAGCAACACCACAAAccacaataataacaacaacaaccaggaCGCCGACGGCAGCGAAGGCACCGGGCAGCCGGCCAAGACCGTTGCCTACACCTACGAGGCCTTCTTTGTGAGCGATGGCCGTTCCAAGCGCAAGCATGTGGCCGATCCGGCAGCCGTCGTGGTCCAGGATCAACAAAAGACGAAATACACGTGCTCCGAATGCGGCAAACAGTACGCCACCTCCAGCAACCTGTCGCGTCATAAGCAGACGCATCGCTCGCTGGACTCGCAGTCGGCCAAGAAGTGTCATACCTGCGGAAAGGCGTACGTTTCCATGCCGGCACTGGCCATGCACGTGCTGACGCACAAGCTCTCGCATAGCTGCGGCGTCTGCGGCAAGCTTTTCTCTCGACCCTGGCTGCTGCAGGGCCACCTGCGATCGCACACGGGCGAGAAGCCCTACGGATGCGCCCACTGTGGCAAGGCATTTGCGGATCGCTCCAATCTGCGGGCCCACATGCAGACGCACTCGGTGGACAAGAACTTTGAATGCAAGCGCTGCCACAAGACATTTGCGCTCAAATCGTACCTCAACAAGCATCTGGAATCGGCCTGCCTCAAGGATGAGGAGGAATTGATGATGGCCATGTCACTGCAGGGACACGGCGGCGATAGCAACAGCGAGAGTGGTGCCAGTCTGTCATCGCCCACGCACGAGTTCCTCGAGCGCGTCAAAGTGGAGGCCAACGGAGGTGGTGTGAATGGCGGAGGTGCTGGTGGAGATGGTGGCGGCAACTTGTATGCCATCTAA
Protein Sequence: MPRCLIAKKWKAYPWLDRTEDNTQATPQHQQHQTTTSSRDEDPSLTNLKSRRSTLDDDEEIDVVGDKFLTKLEKQRTTIASASASSAAPPATASATAEATNNESTTTATATATTTAKCWGPSSPTAGTTAPSPPPHSPEAATRVASNVYNGYTRELSPLHYTAYLPRMESEITVIRAAATALVAAASVGEQQQQQQQQQHLAAYQTPPSSTTSSPSCSPSGAGQGDRFSPLSGMGIHIKTEASGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRIPAEEDLHAAHAILDLSASTAFHPPTQPHQLHQLSLQQQQHHHHLPLTHAHTVPPLEAHAHVRSTSSIAELAAAASVVNEQRPLSNASSSASIHSQQMPSSPASSGSNVQNENSNTTNHNNNNNNQDADGSEGTGQPAKTVAYTYEAFFVSDGRSKRKHVADPAAVVVQDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMAMSLQGHGGDSNSESGASLSSPTHEFLERVKVEANGGGVNGGGAGGDGGGNLYAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -