Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000704.1:1275048-1276976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.18 11 6.8 0.1 1 23 410 432 410 432 0.95

2 7 1.6e-05 0.00098 19.6 1.5 1 23 438 460 438 460 0.98

3 7 1.4e-06 8.5e-05 22.9 0.3 3 23 468 488 466 488 0.96

4 7 0.00043 0.027 15.1 6.4 1 23 494 516 494 516 0.97

5 7 2.2e-05 0.0014 19.1 0.9 2 23 523 544 522 544 0.97

6 7 1.8e-05 0.0011 19.4 0.9 2 23 551 572 550 572 0.96

7 7 8.7e-06 0.00055 20.4 0.1 1 23 578 600 578 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.18	11	6.8	0.1	1	23	410	432	410	432	0.95
2	7	1.6e-05	0.00098	19.6	1.5	1	23	438	460	438	460	0.98
3	7	1.4e-06	8.5e-05	22.9	0.3	3	23	468	488	466	488	0.96
4	7	0.00043	0.027	15.1	6.4	1	23	494	516	494	516	0.97
5	7	2.2e-05	0.0014	19.1	0.9	2	23	523	544	522	544	0.97
6	7	1.8e-05	0.0011	19.4	0.9	2	23	551	572	550	572	0.96
7	7	8.7e-06	0.00055	20.4	0.1	1	23	578	600	578	600	0.98

Sequence Information

Coding Sequence: ATGCCGGCTTCCTATCAGCGCTGTGGTAACATTGTGTGGCAATGTAAGCGACACGCTCGAATCTATGCCTTTAGCTGCATATTTTGCGAACAGCAGATGTCAACATTCAGCAGTTTCAAGAAGCACTTGGAAAATAAGCATCACTCGGACTTGGCTATggctggtgatggtgatgagGAGTTGGAACCAAAATCAGAACCAGTGGTCGAGAGATTACTGCGCAGCAGCCAGAAACAACCATTGCCACTGGCAACGGCTGTAGCTGAAGCTTCAGCTGCGGCTGAAGATAATATGTTGAAAAccgaggctgaggctgaagcaGATCCGCTGGAGCAGAGCCAAATTAAATGCGAACAGGAGATCATTGAGGGTGATGTTGGCTTGCAAGAAGCCGAAGAAATTGCCTGGGTAGATATTAAGCCAGAGGCAGAGCTCGACTTGTTCAGCTCCATTAGACAGAACGAAGACAGCGACAGTCAGGGGAGTATCAGTTCGTTAGAGAGCTCCAGTGAAGAAGACGAGACGCCGCCCACAGACACTTCGCATTTTTGGCTTCTTAAGAATCCGATAATGCTGGCTCTTATCGAGCAACTGAAGCAAGCCCGCCTGCTCTGGGACACTGGCATGCTGGCCTACCGTAACTACAAGCGTCGCAGTGAAGCCTGCGATAAGATAGCCGGCGAGCTGAACCGGCTGTTTGAGCTCCACTTGAGGGGACATGAAATAGCTGAGTATCTCAAGAAGCTGCGCGTCGCCTACCGCCAGGAAAAGAAGCGTTTGGATCAGCAAACGGAAGAAGGACAAGCGCAATGGTATTATGAGCCATTACATTTTATGGACAACAGTCTGAGAAAGAAGCGCCCGCCGCGAGCACTCGGCAGCTCGGACGCTGGCTCGCCCGTGGCTCAGTTGAGTCATGCCCAGAATTTGAAGCTAATTGAGCTTTACCAACGTTGCAGGGAGAACTGGGACATGCAGAACATGTCGTGTCGCCTGCGGCATGTGCGCCAGGCGGCCAAAGACAAGTTGCTAGAGCTGTGCCGCAGCGAGCTGCAGCTAGATGTCGAGCTGGAGCCCTCGCAGCTAAGGCGCTACGTGCACCGCCTGCGCCATGCCTACCAGCAGGAGAAGAGTCGCCGCCTGCGGTGTCAACAGCAGGGCAAGGAATACAGCCCGCGCTGTCGCTACAACCAGCAGCTGCAGTTCCTCGAGGACCACTTGCCACCTTTCCAGTGTGACCTGTGCAGCGAAGTCCTTACCGGCGTCGACACCTACAAGGTGCATCGCTCTGGCCACGATGGCAGTCTGCCCTTTGTGTGCCCCACCTGCGGACGGGGATTCTCGCGCAGCGGCAACTGCACCATCCACCTGCGCCGGCACACCCTCGACTATCAGCTGGCCTGCGAGGAGTGTGGCAAGCGGTTCGCCACCACCTCGGATCTGCAGGTGCATCGGCGCCAGCACACCGGCGAGAAGCCCTTCTGCTGCGATCTGTGCGGACGCCGCTTCACCACCTACTCCTTCTTCGTGCGCCACAAGCGGCGCCACGAGCAACGGCCGCGCGGTAAATGCCACATCTGCGGCAAGACCTTCTTCGAGCAGTCCGTGTTGAACGATCACATCAAGGGGCATCTCAATGTGCGCGATAAGGTGTGCGACATTTGCCAGAAGACCTTCACCAGCGCCAAGTACCTGCGACAGCACAAGGAAATCCATGCGCCGCACAAGCGTTACATCTGCAAGATTTGCGGCAAGGGATTCGCTCAATACGCGGGCCTCAGCGGTCATATGAAGTCCCATGGCACCGCTGTGCACGTCCCCAGCAAGGCCAAAGAGGATGACAAGGATGACACGGCCAAGAAGTGA
Protein Sequence: MPASYQRCGNIVWQCKRHARIYAFSCIFCEQQMSTFSSFKKHLENKHHSDLAMAGDGDEELEPKSEPVVERLLRSSQKQPLPLATAVAEASAAAEDNMLKTEAEAEADPLEQSQIKCEQEIIEGDVGLQEAEEIAWVDIKPEAELDLFSSIRQNEDSDSQGSISSLESSSEEDETPPTDTSHFWLLKNPIMLALIEQLKQARLLWDTGMLAYRNYKRRSEACDKIAGELNRLFELHLRGHEIAEYLKKLRVAYRQEKKRLDQQTEEGQAQWYYEPLHFMDNSLRKKRPPRALGSSDAGSPVAQLSHAQNLKLIELYQRCRENWDMQNMSCRLRHVRQAAKDKLLELCRSELQLDVELEPSQLRRYVHRLRHAYQQEKSRRLRCQQQGKEYSPRCRYNQQLQFLEDHLPPFQCDLCSEVLTGVDTYKVHRSGHDGSLPFVCPTCGRGFSRSGNCTIHLRRHTLDYQLACEECGKRFATTSDLQVHRRQHTGEKPFCCDLCGRRFTTYSFFVRHKRRHEQRPRGKCHICGKTFFEQSVLNDHIKGHLNVRDKVCDICQKTFTSAKYLRQHKEIHAPHKRYICKICGKGFAQYAGLSGHMKSHGTAVHVPSKAKEDDKDDTAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -