Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000770.1:1208665-1210626[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.071 4.4 8.1 1.5 2 23 399 421 398 421 0.94

2 7 9e-05 0.0056 17.2 0.6 1 23 428 451 428 451 0.98

3 7 2.6e-06 0.00016 22.0 3.1 1 23 456 478 456 478 0.98

4 7 2.4e-05 0.0015 19.0 0.2 1 23 484 507 484 507 0.91

5 7 1.8e-06 0.00011 22.6 2.4 1 23 513 535 513 535 0.99

6 7 9.5e-05 0.006 17.1 1.4 3 23 543 563 542 563 0.97

7 7 3.9e-05 0.0025 18.3 1.1 1 23 569 592 569 592 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.071	4.4	8.1	1.5	2	23	399	421	398	421	0.94
2	7	9e-05	0.0056	17.2	0.6	1	23	428	451	428	451	0.98
3	7	2.6e-06	0.00016	22.0	3.1	1	23	456	478	456	478	0.98
4	7	2.4e-05	0.0015	19.0	0.2	1	23	484	507	484	507	0.91
5	7	1.8e-06	0.00011	22.6	2.4	1	23	513	535	513	535	0.99
6	7	9.5e-05	0.006	17.1	1.4	3	23	543	563	542	563	0.97
7	7	3.9e-05	0.0025	18.3	1.1	1	23	569	592	569	592	0.97

Sequence Information

Coding Sequence: ATGGCTACTTGCGGCTACATTTGCGTCAGCAATGACAACGAAAGTTTCTTGATGCGCTGCTCCTATTGTCCCACAGACGTGGAGATAGCCAAGTGGCAGGAATTTGTGCTGCATTATCGGAATGTTCAtgtgaaaaaacaaaagatttgcaatgcaaattcaaaGTCGCCGTCACCAGAGTCTccagaaattgcatttgcagatAAAGTCAAAGTGGAAATAGATTTTAAGAATGAATTTTCGGacgaagaggaagaggaaatAGTGCTGCCATTGGCTGTCGATGTAAGCGCGGAGGCGGAGGTAGGCGACGACAGCCTGGATTCGGATGCTGAATTTATTGCTCGGGGTAAAGCGTCCGGTTCCAATTCTGATGCCAGTTCGTCTGTTAGCGACGATAACGATGACTCAGACTGGAATTCAGATTCCCGTTCTCAGTCCCAACCAGAATCTGTAAAGGACGATGGCGAAGTCGATGGGGAAGGCAACGTTCTGACATCACTAACATATAAGTTTAATCCCTCGTTCTTTCGGCGAGATCCACGCACATTAAAGTTTATCGAGCTGTACAAGAGTCAGCCGTGTCTTTGGAATTCTGGGCACAGCAAGTATAAGAATCCAAGCGCAACTAAGGCAGCCTATCAGCTGCTTATTAAAGACTTGGAGAGCAAAGTCGCCGTAATTCTCACCGAACATTCACTGAAGACGGCCATCAAGAAGATCCACATGCAATACAACATGGTGGAAAAGCGAGTACTCTGTGGCAGCCTAAAGGAAAACTCCGTGGCATATAGTCATTACACAAGATGTAGCTTTCTAAAGGCCACCGAAGGCAAAACGGCCACCctagaaaatgaaaagatCCAGTTGGATTTCTGCAGCAAGAATGAGTTAACCACAAAGTTCATAGAGTTATATGGCAGCTTTCCTCAACTCTACGAGCCCAAGCACAAGGAATTCTCAAATATGAGCTCTCGCAAGCAAGCTTACGAAACGGTGGCTGTCAAAATTGCCGAGTCGAATGCTGACGCGGTAAAGGATATCAGTAGCGATGACATATTCCGCGCCATACAAATGCTACGCCAGTGGTACTATAGGAACACAAGATATGCAGTCAAAACTGGCAATGAGTCTGAGCAGGCGTACTTAAAAATGTGCCGCTTTCTGCCACCGAAGATGTACAGGCAGAAGCTGATTTGCGAGATCTGCCAGCATGTAACCTCTACGGATCacttgctgcagctgcatctCTTCAAGGCCCACAACATTGGCGAGCTGCCCTTCAAGTGCAACTTGTGCGAGCGCAGTTTCATTGCTCGTGTTGAACTGTCCACCCATATGCAACGTATGCACATAGGCAAGACACACAAATGTGAACACTGCGACAGATCCTTTGCCGTAATGTCGGATCTGAAGCTGCATATCCGTACCCATACCGGCCACAAGCCTTACATTTGTGAGCAGTGCGGCAAGGCATTTAGACTGAGATCGCAACTGAAGATGCATGTCACCGCCATACATACCAAGACAAGGGCATTTAAGTGCACCATGTGCCCCAAGGACTTTGTGCGTAAGGTTCATTTGACGGATCATATCAAAAGCCACCTAAATATACGCGATAAGATCTGTACAACTTGCGGCAAGGGCTTTTCCAGTGGACACACGCTCATTAGACATCGTCAGATCCATGCGGAGGTAAAGAAATTTGTGTGCAAACTTTGCGATTTAAGGTTTTCGCAATTTGTCGGCCTCAATTCACACATGAAACGCACTCACAAAATAGTCCGTGGTAATGCGCAAAAAAATGAGACTGCCATTACAGAACAAACTGAGGATATGTAA
Protein Sequence: MATCGYICVSNDNESFLMRCSYCPTDVEIAKWQEFVLHYRNVHVKKQKICNANSKSPSPESPEIAFADKVKVEIDFKNEFSDEEEEEIVLPLAVDVSAEAEVGDDSLDSDAEFIARGKASGSNSDASSSVSDDNDDSDWNSDSRSQSQPESVKDDGEVDGEGNVLTSLTYKFNPSFFRRDPRTLKFIELYKSQPCLWNSGHSKYKNPSATKAAYQLLIKDLESKVAVILTEHSLKTAIKKIHMQYNMVEKRVLCGSLKENSVAYSHYTRCSFLKATEGKTATLENEKIQLDFCSKNELTTKFIELYGSFPQLYEPKHKEFSNMSSRKQAYETVAVKIAESNADAVKDISSDDIFRAIQMLRQWYYRNTRYAVKTGNESEQAYLKMCRFLPPKMYRQKLICEICQHVTSTDHLLQLHLFKAHNIGELPFKCNLCERSFIARVELSTHMQRMHIGKTHKCEHCDRSFAVMSDLKLHIRTHTGHKPYICEQCGKAFRLRSQLKMHVTAIHTKTRAFKCTMCPKDFVRKVHLTDHIKSHLNIRDKICTTCGKGFSSGHTLIRHRQIHAEVKKFVCKLCDLRFSQFVGLNSHMKRTHKIVRGNAQKNETAITEQTEDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -