Hdun007001.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000437.1:7232-8642[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2 78 4.2 1.3 1 20 166 185 166 187 0.90 2 9 0.0002 0.013 16.1 1.6 1 23 194 218 194 218 0.95 3 9 3.5e-05 0.0022 18.5 2.0 1 23 225 250 225 250 0.91 4 9 0.00023 0.015 15.9 1.6 1 23 259 281 259 281 0.97 5 9 6.4e-06 0.0004 20.8 1.9 1 23 289 313 289 313 0.97 6 9 0.0037 0.23 12.1 0.7 1 23 319 341 319 341 0.97 7 9 0.00059 0.037 14.6 3.0 1 23 347 370 347 370 0.98 8 9 0.00074 0.047 14.3 0.9 1 23 376 398 376 398 0.97 9 9 1.1e-06 7e-05 23.2 0.2 3 23 406 426 405 426 0.99
Sequence Information
- Coding Sequence
- atggcTAATTTTGGCAAATGCCGCACATGTTTTGTTGGATTTgagccaacaaacaaacaatacaaTATGCTGGAAATTCCAGAAGTGGCGGAAAAGTTCTACACCTGCACAAGCCTAAGGGTGAAAGCGGAAGAGGCAGCAGAAGTTCCTCCGGTGCTCTGTCAGTCTTGTTATGACAAGCTGGAGAATTCTATTGGATTTCGGGAAATGTGCATAGCTTCCGATGTACAATGGCGTGCACTGGCTCTACTCGTTGTTGAGGAGGAGATTGAGAAAGCCAGATACGATTTGGAAGCTGCGGCCAAGCACCACAGCAACGTGGTCACTGTGGAAGCCACAGAGCTGATGAAAGAATGCAAAGGGAAAGGGAAGCAGAAAATCACAAGACGCGTCAGGCGGCCAACATGTAGGAAAAGTCAGCAGCAAGTTGACCCAGTGGGGGTGCCAGTGACAAGAGTCGAGGGGGCGGAACAGCCTAAGGAAGACGCACCCAGCTATAAATGCGACATCTGCTCTATGCAATTGTCTGCGGAGCATCGACTGCAGGCTCACAAGTGTCAACTTGATGACCTCATGCCATATGCCTGCACCGAGAAGGGTTGTGATCGTGCTTTTAATAGACAACATTTCCTGAGGGAGCACCTAAAGGAGCATGCAGGCACTACTAGGCGGTACGACTGTATGCAGGAGGGCTGCAATAGGAGCTATCGCCACAATTCCACTCTCACTATGCACATGCGCAAAGCTCATAAGCTGGGTCCAGAGCTCAAGTCGCATGTCTGTGAGTTCTGCGGCAAGGTCTTCAAATCATCTGCTATACTTAAGGATCACCGTTACACGCACAAGGACAAGGTAGATCTTCCACACACTTGTAAGGAGCCAGACTGCAACAGAGGCTTCTCCAGCAAGGAGAAGCTCAAGGTGCACATGATGCGGCATCTGGGCATCAAGAACTTCGTCTGTCCCTTTTGCGGCCTGCGCAAGACCACTCGCAATGAGCTAAAGCTGCACATAAACTATCACACGCTGGAACGCACCTATCCCTGCCGCTTCTGCTCCAAAGTTTGTCACAGTGCAGGCAATCTCAAGATGCATGTACGCACTGTCCACGAGCATGCCCGCGACTATGCCTGCAGCTACTGCGAACGCACCTTTGCCAAGCCGGACACACGCAAGTACCATGAGATGACGCACACCGGCGAGAAGCCGCATGGCTGTGAGGAGTGTGGCAAGCGATTTACGCAACCGGCGGCACTGCGGACGCATCGTAAAATTCATCAGCGACAACTACCTCTGACAGATTCAACTACCGTGGTTGCAATTGAGGGACTCGTTAGCCACGATCCAAAATAA
- Protein Sequence
- MANFGKCRTCFVGFEPTNKQYNMLEIPEVAEKFYTCTSLRVKAEEAAEVPPVLCQSCYDKLENSIGFREMCIASDVQWRALALLVVEEEIEKARYDLEAAAKHHSNVVTVEATELMKECKGKGKQKITRRVRRPTCRKSQQQVDPVGVPVTRVEGAEQPKEDAPSYKCDICSMQLSAEHRLQAHKCQLDDLMPYACTEKGCDRAFNRQHFLREHLKEHAGTTRRYDCMQEGCNRSYRHNSTLTMHMRKAHKLGPELKSHVCEFCGKVFKSSAILKDHRYTHKDKVDLPHTCKEPDCNRGFSSKEKLKVHMMRHLGIKNFVCPFCGLRKTTRNELKLHINYHTLERTYPCRFCSKVCHSAGNLKMHVRTVHEHARDYACSYCERTFAKPDTRKYHEMTHTGEKPHGCEECGKRFTQPAALRTHRKIHQRQLPLTDSTTVVAIEGLVSHDPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -