Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000717.1:692897-696887[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0001 0.0064 17.0 4.9 1 23 192 215 192 215 0.97

2 16 0.003 0.19 12.4 3.9 1 23 260 283 260 283 0.96

3 16 0.00075 0.047 14.3 3.3 1 23 351 374 351 374 0.96

4 16 0.026 1.7 9.4 0.4 2 23 427 448 426 448 0.96

5 16 1 64 4.5 0.6 1 21 566 586 566 587 0.86

6 16 0.032 2 9.2 0.6 1 23 596 618 596 618 0.93

7 16 0.035 2.2 9.1 0.4 2 23 626 648 625 648 0.94

8 16 0.018 1.1 10.0 3.4 2 23 656 677 655 677 0.96

9 16 0.019 1.2 9.9 0.3 3 21 705 723 704 727 0.90

10 16 0.0013 0.083 13.5 1.3 1 23 763 786 763 786 0.96

11 16 6.4 4e+02 2.0 2.1 1 21 793 813 793 814 0.92

12 16 0.0085 0.53 11.0 1.0 2 23 824 846 823 846 0.96

13 16 2e-05 0.0013 19.3 0.6 1 23 867 890 867 890 0.97

14 16 0.15 9.4 7.1 0.2 1 23 900 922 900 922 0.93

15 16 6.8e-05 0.0043 17.6 2.1 1 23 928 950 928 950 0.99

16 16 4.5e-05 0.0028 18.2 3.7 1 23 956 978 956 978 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0001	0.0064	17.0	4.9	1	23	192	215	192	215	0.97
2	16	0.003	0.19	12.4	3.9	1	23	260	283	260	283	0.96
3	16	0.00075	0.047	14.3	3.3	1	23	351	374	351	374	0.96
4	16	0.026	1.7	9.4	0.4	2	23	427	448	426	448	0.96
5	16	1	64	4.5	0.6	1	21	566	586	566	587	0.86
6	16	0.032	2	9.2	0.6	1	23	596	618	596	618	0.93
7	16	0.035	2.2	9.1	0.4	2	23	626	648	625	648	0.94
8	16	0.018	1.1	10.0	3.4	2	23	656	677	655	677	0.96
9	16	0.019	1.2	9.9	0.3	3	21	705	723	704	727	0.90
10	16	0.0013	0.083	13.5	1.3	1	23	763	786	763	786	0.96
11	16	6.4	4e+02	2.0	2.1	1	21	793	813	793	814	0.92
12	16	0.0085	0.53	11.0	1.0	2	23	824	846	823	846	0.96
13	16	2e-05	0.0013	19.3	0.6	1	23	867	890	867	890	0.97
14	16	0.15	9.4	7.1	0.2	1	23	900	922	900	922	0.93
15	16	6.8e-05	0.0043	17.6	2.1	1	23	928	950	928	950	0.99
16	16	4.5e-05	0.0028	18.2	3.7	1	23	956	978	956	978	0.98

Sequence Information

Coding Sequence: ATGACAAGAACATGCAGGGTCTGCGCCGGGTCAGATGGCCGCTATTGGATTGAAATGCCGGTTAAGAAATATGCAGAAAAGACTTTCAATCAAATCTTCCAAGAGCTGACCAAAAttgagGTCACAATGAGTCATGCCGATAATCTGCCACCTTGGCTTTGTAGACGATGTGCACAGAAATTGAAGAATTCATACGATTTTGTGCTGCTAGCTAAGCAAACGCACGAACTCTGGCTCCAGAAACTTGGGCCGGGAGCGGAAGCAGATAAAAGAGATAATGATTTCGAGCAGGGCACATTGGAGTGCCTGCGCGAGACGCCAATTCAGCTCATGGACATTGAAGGAGTGACGATTAAAGTGGAAGAGCCTGTTGAGCAGCCCATGCTTTATGAGGAAGGGGAACCGGCGCCTGCCGCAGTCAGCTCTGGCTCTGCGGATCCCCTCTACCGAACCTTGCGCACCATCAAAAGAAGCATTGTACACTTTAGCGACTCCGATGATGACGATGTGCCGCTGAAGCAACGCTTGTCAGCGCCAGGATACAGATTGAAAAACACACCCTCTGTAAAGCAACACAAATGCAATCTATGTGATAAATCCTTTCGTTATATCACGAATCTATTCCGGCATAAGCAGCGTGATCATAATAGCGACAATTCGCCAGCAACCGATCCAGTTTTACACAACCTTATCAAAAGCGCTGCGGCGGCACGCGCTACTGCCCATTTAGACTGTGGGGATGATGATGCCGGCAGCGGTTCGGCGGTGGACAACTATTACAAGTGCGACCAATGCGACAAATCTTATAAGTACATCATGCTGCTAatcaagcacaagcacaagtcTCACGGTGGCGCCAATCAGCTGCCATCACAGTCCAGGGTACCCATACGCAGAGCCGGCGGATTGGACAGTCCGTCGTCAGTTGGTCAAATGTCCAAGGCAAATGGCGTTCAGCGTTCCAAGCTTAGCACGGATACCTTGGTGCACAGCATCATAAAAGCGGTGGAAGTATCGGATGAAGATGGCGCCAGTGGATCGGATAACTACTACAAGTGCGATCAGTGCGACAAATCCTACAAGTACGTTGTGAGTCTCATTAAGCACAAGCATAAAGACCACAATGCCTACTCCAAGGACTCGGATGAGGAGGAGAACGGTGGGCAGGCCTTGCCATCTACTTCTGCTTCGGCATCATCGAACCGACCATCGAGAATTGATCGGCGCGTTCACGACTTTGATTTGCATCGCAGTCAGCCAAGTGGTTCCAAAGAGATCAAGTGCATGATTTGCTTGCGCAGATTCGCCAAAATCCGAGAGCTGCGCAATCATCTGGCCAACCATCCTAAGAACTTCAGCTTCGAGGATCATGGCGAACCAATTGAACGCATTGCCGAGGGCTTCTTTAAGACTGCTGTGGAGTCCACAGCGGAGGGGCTGCGGCGGCGTATTCTCAGGGAACTGAAGATGGGCTTGTTCGGGCGCTATTATTCTATAACCAATGAGGCGCGGTACGAGATGACCCTGGACAGCTCGGATACTGATAGCGATGGTGATGGGGAGGCGGCCGACACGGATGTGGTCCTGCGTCACAGTTATGCCTGCGAGCTGTGCAACTCGCCCAAGGCCAGGTGGCCCCGCAAATACCAGATTCACcaacaccatcagcagcagcacacctGGCTGGAGGCGCCATATGTCTGTCAGCGTTGCGACTCCCGTTTCTTGAGCGCCCAGCTGCTCGAGCACCATACCAGCACCCTCTGTCAGAATACACTGAAGCGCTTCATGTGCGACAAGTGTCCGCAGCGCTTTTTCTGGCGCCGTAACCTGCGCGCCCATCTCGTTGATCACAAAAGCAAGCAAGAAACCTGGCCGTGTGACCAATGCTCTCGCAGTTTTCTGGATAAGAGCGGCGTCACCAGACACAAGCTGATGTATCATGATGTGAGCAAGGAGCTGTTGCCCTGTCGCTGGTGTTCGCGCACCTTCTACCGTGTGGCCTTGCTGCACAGACATCTTCATCGGCATGGTTTTAGCGGCCAGGATCTGCCCTTGGCCGAAACACTTCTGGCAGATGCAGCAAAGCCAGCTGGCACCAAGACGATCCTTTGCAAGCTGTGCGATCTGCAATTCATTAGCATCAGCGATCTGCGACGGCACAACTCTATGCAGGGACACGAGCCGCAGCTGGAAAACTATATGATCAGCACGGAGTCTGGCTtcgaactggagctggaggatACGGATGATAGCGATGACGATGAGAATGCTACGAGCAGATCCTACACTTGCGATCTGTGCGAGATGACCTTCCGGCGACGGCGTGACATGAGCGAGCATCAATACTCTCTCCATGCGTTCGATAGGCTGCCGCACGCCTGCCAGCACTGCATATTCAAGAGCGTCGACAAGCGCATGCTGGAGCATCATCAGCGAGCTCAGTGCCTGAATGAGCTGAAGAAATGCCGTTGTTCACGTTGCGGCTATAAATTCATGTGGCCCGAGAATCTGGAATTGCATATGGCCACACAGCATCCCAAGGCGTCACATTCGGAAAAGCCAGCCCCTATCAATCCAAGGAGCAGGCGCTTCAGATACAAATGCCCCCACTGCTGGCGCTCCTTTGTGGTACAGCCCAGTCTGGACAAGCACATTCGAGACATGCATGTGGCCAAAAAGACTCAGACCAAAAAGTATCTCTGCTCGCTCTGCGGCCTCGAATCGCTCACGCCCAACAAGCTCAACATTCACATGCAACGACACAACGGCGAGAAACCCTTTAAATGCGATCTCTGTGATATGCGCTTCACCGTCTTTTACGAACTGAAGGTTCATCGGCGTAAGCACACCGGTGAGCGGCCCTATCAGTGCACCTTCTGTTCCAAGCATTTCGCGCGCCCCGACAAGCTGAGGAGGCATGTCTATATGCATAGTGTTAAGCGTTAG
Protein Sequence: MTRTCRVCAGSDGRYWIEMPVKKYAEKTFNQIFQELTKIEVTMSHADNLPPWLCRRCAQKLKNSYDFVLLAKQTHELWLQKLGPGAEADKRDNDFEQGTLECLRETPIQLMDIEGVTIKVEEPVEQPMLYEEGEPAPAAVSSGSADPLYRTLRTIKRSIVHFSDSDDDDVPLKQRLSAPGYRLKNTPSVKQHKCNLCDKSFRYITNLFRHKQRDHNSDNSPATDPVLHNLIKSAAAARATAHLDCGDDDAGSGSAVDNYYKCDQCDKSYKYIMLLIKHKHKSHGGANQLPSQSRVPIRRAGGLDSPSSVGQMSKANGVQRSKLSTDTLVHSIIKAVEVSDEDGASGSDNYYKCDQCDKSYKYVVSLIKHKHKDHNAYSKDSDEEENGGQALPSTSASASSNRPSRIDRRVHDFDLHRSQPSGSKEIKCMICLRRFAKIRELRNHLANHPKNFSFEDHGEPIERIAEGFFKTAVESTAEGLRRRILRELKMGLFGRYYSITNEARYEMTLDSSDTDSDGDGEAADTDVVLRHSYACELCNSPKARWPRKYQIHQHHQQQHTWLEAPYVCQRCDSRFLSAQLLEHHTSTLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKSKQETWPCDQCSRSFLDKSGVTRHKLMYHDVSKELLPCRWCSRTFYRVALLHRHLHRHGFSGQDLPLAETLLADAAKPAGTKTILCKLCDLQFISISDLRRHNSMQGHEPQLENYMISTESGFELELEDTDDSDDDENATSRSYTCDLCEMTFRRRRDMSEHQYSLHAFDRLPHACQHCIFKSVDKRMLEHHQRAQCLNELKKCRCSRCGYKFMWPENLELHMATQHPKASHSEKPAPINPRSRRFRYKCPHCWRSFVVQPSLDKHIRDMHVAKKTQTKKYLCSLCGLESLTPNKLNIHMQRHNGEKPFKCDLCDMRFTVFYELKVHRRKHTGERPYQCTFCSKHFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -