Hdun009376.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000688.1:1290571-1294291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.017 1.1 10.0 5.1 2 23 364 386 363 386 0.96 2 15 0.095 6 7.7 4.0 2 23 429 450 429 450 0.93 3 15 0.0069 0.43 11.3 0.6 3 23 520 540 518 540 0.95 4 15 0.0014 0.088 13.5 1.1 1 23 548 571 548 571 0.98 5 15 0.0004 0.025 15.2 0.6 2 23 576 597 575 597 0.97 6 15 0.00044 0.027 15.1 0.5 1 22 645 666 645 669 0.90 7 15 0.44 28 5.6 0.7 3 22 676 695 676 695 0.91 8 15 0.034 2.1 9.1 0.6 1 23 714 739 714 739 0.96 9 15 0.027 1.7 9.4 2.3 2 23 758 780 757 780 0.94 10 15 0.0015 0.094 13.4 0.7 2 23 786 808 785 808 0.93 11 15 0.012 0.73 10.6 0.1 2 23 812 834 811 834 0.95 12 15 5.1e-05 0.0032 18.0 1.6 1 23 840 862 840 862 0.98 13 15 0.037 2.3 9.0 2.4 1 23 866 889 866 889 0.91 14 15 1.1e-05 0.00068 20.1 0.7 1 23 895 918 895 918 0.97 15 15 0.00013 0.0081 16.7 0.3 5 23 931 950 923 950 0.92
Sequence Information
- Coding Sequence
- ATGTCCGaaattgctgccagctgcctgCATTGCAGTGTTtacaatacaaaatatcaatACCATGAAATCTTTGACGAAATTGGTGTGGAAATCGGTCTCGCCAAGCTGTTGGCCAAGCATTGTCAGCTGGAGGTGAAGCCGGATGCAAACAAGCCACAGTTGCTATGCGAGGTGTGTGTGAATACGCTGATACGCTTCTTCGACATTGATGAGCTGCAAAGACAGCGGGATGCGGCCAGGAATAGTAAAGAGGTGGGGTTGGCTGTACCAGCGGCGGTGGCTCCTCCTGCCatcaaaaagcaaaaggagcTAAAGCAATCGTCTGTACAAAAGTCAACAACGATTCAGGCTGTGCAGGCCAAGCCCAATACACGAACTAATACAGATGCAGCTCCTCTGGCAAAGTCAGTTATCCAAGTGACCAAGCCTCTGCAGAAGCCAGACATACTCTCAATCAAATCTGTAGCCAAGCCTCTGAAGAAGCCAGCCATACTCTCAAGCAAATCTCTAGCCAAGCCAATAGAAACTGCTGCAGCCACTCCTGCAATTGTGTCGGCTAGACATGTGTCACCTGCCAAGTGCCAGCCCAAGCAATCTGCTACACTCAAGCGAACTACAAGAGCTAGAGCTGTTCAGGATCAGGAGCAGATTGTTGCTTtgcttggcaaaatattggatgAAGATGAAACTGAAgatctaaatttaaatgagCCGAAAATGATATCAGATACCAAAAGCCAAGAGCCCGCAGCAACACTATTAGAGGAAGATACGCTCGCTGAAGCTGTAGAAGAGGCCCAGCAAGATGACAAGGAATATTTGCTAGAATCAGCAGAAGTGCCAGCTGTACAAGAGAAACGTCTAATCACGGCTAGAAAACAAAGCTTCAGCGTACAGCTAAGGCAAACCTACAGTCACAGTCAGAGCGAGGATGATCCCGACGAACTGATCGAAGAGGGAGAGTCAACCAATGTTGAGGTCTTTAACTTTGTCTTGATCAAGGAATCTGATGATATAGACGACCTCTACGAGTATCTGGCCACCGTGGTGAAAACGTGCTTTGAGAGTCTAACCTTCGATTGGAACACTGTGTGCAAGCATTGCTCACAGAAATGTTCAACATATGAGCAACTGTTAGCGCACCTGCAGAAGCGCCATAAATTAGCCGAAGATCAATATAACTGCCCATTTGAGGGCTGTACGCTGCAGCTGGCGGGGGTGAAATCTTTAGCGATGCATCTGGTGCTCCTACATGCACCTGTGGCGGACATAAGCATCTATGGCAGCTGTCCGGAGTGCAAGATGACCTTCTCGAATATCCTGCATTATAACAAACATTCCTGCGCTCATGTGATCAAAAAGCGACGCGGCGTGCGTTTATTTTGCGAGATGTGTGCCTTGGAGTTTCCCTCCTGGAAGCGattcaattttcataatcaatttcatttggagCGGCATCGTCCGCGCGTCTGTTTCGTCTGCAACTATGCGGATACCAATATCGACGAGCTATTCCAACATTTACACTATTCTCATGAGCCGGAAGGCACGCTCTTCTGTGATCTCTGTGATCGGACTTTCCGTGATCCCACTGTCTTCATGGAACATAACAAATCGCATGCCAATGTCAGCAGCACCACCTACTCCTGCAACGAATGCGTTGCCCACTTTGACACTCGCGGGCGCCTTAATGGACATATGCGTACCATGCATGGCCAAATCATTAGCTGCGATCTGTGCAGCCGTGAGTTCAGCTCGGAGGGCAGCTACAACATGCACATGAAGAAGCATTTAATCATAGAACGTGAGGTGCATGTCTGCAGCTGTTGCGGTCTGCTCAGCGAGAATCACCAGAAGATGGTGGCTCACGTTGAGAACGAAGATTCGACTTGTTTGGGCATGTCCCTCTATATGGAGATGCTGCGCGATGCCTATATCTGTGAATACTGCTCATTGTATTTCAAGCAGAAGACCGATTTGAGGGCCCATCGGGAGTCGGGCGTACATAACGATGGCAAGTTCTGGTGTCAGCCCTGCCAAAAAGAGTTTCCTGATATGAAACTCTATCGCCATCATTTGCGCACCTATCAGCAGCTGCGCACAGATGTAGCTCATTGTAAGCTGGAGATTTGCCTCTTCTACATGTGCGATCAAGGGAACTGCTTTGAGGTGTACGCTAACTGGAATTCCCTGTACACTCACAAAAAACGTAATCATGAGACCAAAACTAAGCTGGCGAAAACGGTGCAGACTAAAGCTAGCCAGGATTGGGTGTGTCAGTTTTGTCAGAAGAAGTGTCGCTCAAAGATGTCCCTCTCCGTGCATGTGGCTCGCAGTCATAACAACAATAATGTAACTTGTGAGCTGTGCAAGGCGTCGTACAAAACCCAGGAGGCATTGCAAAAACATCATGCCTACTGGCACGAGCCCATTGAGTGTCCCGAATGCCTTAAGGTGGTTAAGAATCGCCGCAACTATGATACCCATGTGAATGTGGTTCACTCGGACAGGAAACGCTACAATTGCAGCGTCTGCGATCGAGGATTCTATCACAAAAGCGAAATGGAGGCACATCAAAAGCTGCATTCACAATCCTATTCTTGCGAGCAATGCAAATTCACCACCCGAAACAAGAAATCCCTATCTGTCCATTTCCTGGGCAAACATTGCAAACGCTTTGAATTCGAGTGCAAGGTGTGTTCCAAGAGTTTTGGGCGCCGTCAGGGTTTGATCACACATATGCAGCGTGTGCATGGGCCTACGTTAGTGTGCCGCGACAATTTTGAAGACGGCTGTGGTAGAAGTTTTCCCACCCAAGCCCAGCTATGTGTACATATAAAGAAAGTTCATGGGGTCATCGTGAAGAAGGATGATTTGGTTGCAGATGAGCCGGAGCCAAATGCAGGCAAGAGACGTTGCTATCGTCTTAGTGGCGAGTCCAAAATTCAGCTAAACGACGATGAGCAagatgatgatgtggatgatggTGAAAGTCTATGCGGATCCCTAGAATTTGAAGAGTTCCAGTCAATCGAAGATGAGGAGAAGTGa
- Protein Sequence
- MSEIAASCLHCSVYNTKYQYHEIFDEIGVEIGLAKLLAKHCQLEVKPDANKPQLLCEVCVNTLIRFFDIDELQRQRDAARNSKEVGLAVPAAVAPPAIKKQKELKQSSVQKSTTIQAVQAKPNTRTNTDAAPLAKSVIQVTKPLQKPDILSIKSVAKPLKKPAILSSKSLAKPIETAAATPAIVSARHVSPAKCQPKQSATLKRTTRARAVQDQEQIVALLGKILDEDETEDLNLNEPKMISDTKSQEPAATLLEEDTLAEAVEEAQQDDKEYLLESAEVPAVQEKRLITARKQSFSVQLRQTYSHSQSEDDPDELIEEGESTNVEVFNFVLIKESDDIDDLYEYLATVVKTCFESLTFDWNTVCKHCSQKCSTYEQLLAHLQKRHKLAEDQYNCPFEGCTLQLAGVKSLAMHLVLLHAPVADISIYGSCPECKMTFSNILHYNKHSCAHVIKKRRGVRLFCEMCALEFPSWKRFNFHNQFHLERHRPRVCFVCNYADTNIDELFQHLHYSHEPEGTLFCDLCDRTFRDPTVFMEHNKSHANVSSTTYSCNECVAHFDTRGRLNGHMRTMHGQIISCDLCSREFSSEGSYNMHMKKHLIIEREVHVCSCCGLLSENHQKMVAHVENEDSTCLGMSLYMEMLRDAYICEYCSLYFKQKTDLRAHRESGVHNDGKFWCQPCQKEFPDMKLYRHHLRTYQQLRTDVAHCKLEICLFYMCDQGNCFEVYANWNSLYTHKKRNHETKTKLAKTVQTKASQDWVCQFCQKKCRSKMSLSVHVARSHNNNNVTCELCKASYKTQEALQKHHAYWHEPIECPECLKVVKNRRNYDTHVNVVHSDRKRYNCSVCDRGFYHKSEMEAHQKLHSQSYSCEQCKFTTRNKKSLSVHFLGKHCKRFEFECKVCSKSFGRRQGLITHMQRVHGPTLVCRDNFEDGCGRSFPTQAQLCVHIKKVHGVIVKKDDLVADEPEPNAGKRRCYRLSGESKIQLNDDEQDDDVDDGESLCGSLEFEEFQSIEDEEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -