Hdun007044.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000452.1:73421-75468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.24 15 6.4 0.3 3 23 309 330 308 330 0.91 2 10 0.00025 0.016 15.8 0.5 6 23 339 356 339 356 0.99 3 10 9.9e-06 0.00062 20.2 0.3 1 23 362 385 362 385 0.98 4 10 0.00014 0.009 16.6 0.6 1 23 397 419 397 419 0.98 5 10 0.00025 0.016 15.8 5.6 1 23 426 449 426 449 0.96 6 10 1.3e-05 0.0008 19.9 2.2 1 23 455 477 455 477 0.97 7 10 0.12 7.8 7.3 0.5 2 23 486 507 485 507 0.96 8 10 0.00012 0.0077 16.8 3.1 2 23 513 535 512 535 0.95 9 10 2.4e-07 1.5e-05 25.3 0.7 2 23 542 563 541 563 0.97 10 10 0.0005 0.031 14.9 3.5 1 23 569 592 569 592 0.96
Sequence Information
- Coding Sequence
- ATGATCTGTCGCTTGTGTTTACGAAGTATAAACGCAAACAATGCCGTCTTCTTATTTGAAACCAACGAGACGTTGGCAGAGACAACGCTGGTGAAGATGATAGCCAAGTTTTTGCAGCTGGAGATAATGCCCGATGACAGCATCTCGACAAGTGTCTGCTCCGAGTGTTGCGAGCACTTGGAGGACTTCAATAGCTTCTGGCAGCTTGTGGAGCAGAAGCAGGGCACCCTGAAGAAGGAGTTCCTCAACGTGGATGTAGAGTGTGGCGCCATGAAGTGGACACCGATCGATGTAGACGTTAACATTGATATTGATGAACTGCCGCTTGTGGCTGCGGAGATGGACGAGAAACCGCTGGACATGCATAATCTGAGTCTGCTCAGCAGCGTGCTGGATGTGAACGTGGACAGCGTGGAGGTGATGCAGCTACCCATGGCTAGGCCCCCATTAAAAATTCAAGATCAGGAGTTTCAGCCCGCCGGCGAGCATGATTTTGTAGAGGATGAGAAGCCTGTGCTACATCACAGTagtagcagctccagcagtagtaacagcagcagcgatgaTGACGCTGCATCTGGGGCTGGACCTGGTGATGACAATGTCAATGCAATTGCCTCCtccgatgatgatgaagtgCCGCTGGTTAACCTACAGCTcaggcaaaagccaaagcgGAAGGCTTTCGCACGCTTGGCCCGCACCGTCAATAAGAGGCAGGAGCGCACCCTCACGCTTACCCAAGAACTGGAGGATCTGCTTGGTGATAGCAGCAAGCGCCAGAAGCGAAAAAGCCAGCGCCTGCCCACCGAGACGCAAGAGAGCGAGCTGCAGGCGGCATTAGAGCGCAAGCCAAAAGGCTGTTCCCGGAGTCAGCTGACCAAACGTTACGAGGAAGTGATCGCCAGCTACATGGACGCAGACTGCGATCTGTGCGATTTCAAGGCCAAGTATCTGTCGGAGTTGAAGACGCACTTCCTTGAGGTACATCAGCGGGATGCTTACCTCAAGTGCTGCAACAAGATCTTCAGTCGCGCCTCCAAGCTAATGGACCACATACGCAAGCACGTCAATCCCAAGCTGTTCACCTGCACCATATGCAACAAATCGCTGAACTCGCAGGATTATCTGGCCACCCACATTGAGACGGTGCACAACAAGGTGGCCCAAAGTGGCAAGGTGCTGAAGTATCCCTGCTCTAAATGCGAGCGCACTTTCAGCAGCGAGCGGCGTCTGGCCAATCATCTGGCCAAGCACGATACCGACCAGCTGGAGCATAGCTGCCAGATCTGCCACAAGAGTTTCGCCAATGTGCACCGCCTGCGCCGACACATCCAATCCATACACGAGGATTTGCATCCTCATGTCTGCGACATTTGCGGCAAGAAGTTCAAGTTCAAGCCTTCGTTCGAGCGCCACCTGCAAGAACACCAGGGCGTCGTGGCACCGGCCATGGAGTGCCCCGTGTGCGGGGTGTGGCTCAAGAACGAGCACAGCCTCCGGCTGCATCGCTTCACCCACGACAGTACCGACACTGTCTGTCCGCACTGCTCCAAGAAGTGCAGTTCGCGGACCGCATTGCGGGCACACATCAAGTATGCCCACAAGCTGACCACGAATCTGCAGTGCACGTACTGCGAGAAGAGCTTCAAGCAGCAGCGCAACCTGGAGGAGCACATGGCGATCCACACGGGCCTGCAGCTGTACAACTGCCCGCACTGCCCCAAAGAGTGTCGCTCCCGTGCCAACATGTACGTGCATATCAAGCAGCGGCATGCGGAAGAGTGGCTCAAGGCCAAGATGGCGCGATCCCACAATCCTCAGTTCAAGCCACTCGCGTAG
- Protein Sequence
- MICRLCLRSINANNAVFLFETNETLAETTLVKMIAKFLQLEIMPDDSISTSVCSECCEHLEDFNSFWQLVEQKQGTLKKEFLNVDVECGAMKWTPIDVDVNIDIDELPLVAAEMDEKPLDMHNLSLLSSVLDVNVDSVEVMQLPMARPPLKIQDQEFQPAGEHDFVEDEKPVLHHSSSSSSSSNSSSDDDAASGAGPGDDNVNAIASSDDDEVPLVNLQLRQKPKRKAFARLARTVNKRQERTLTLTQELEDLLGDSSKRQKRKSQRLPTETQESELQAALERKPKGCSRSQLTKRYEEVIASYMDADCDLCDFKAKYLSELKTHFLEVHQRDAYLKCCNKIFSRASKLMDHIRKHVNPKLFTCTICNKSLNSQDYLATHIETVHNKVAQSGKVLKYPCSKCERTFSSERRLANHLAKHDTDQLEHSCQICHKSFANVHRLRRHIQSIHEDLHPHVCDICGKKFKFKPSFERHLQEHQGVVAPAMECPVCGVWLKNEHSLRLHRFTHDSTDTVCPHCSKKCSSRTALRAHIKYAHKLTTNLQCTYCEKSFKQQRNLEEHMAIHTGLQLYNCPHCPKECRSRANMYVHIKQRHAEEWLKAKMARSHNPQFKPLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359624;
- 90% Identity
- -
- 80% Identity
- -