Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: Clamp
Assembly: GCA_037043425.1
Location: JBAMBM010000133.1:2858383-2860587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.2e-05 0.0058 17.2 0.5 1 23 133 155 133 155 0.99

2 7 0.00023 0.015 15.9 0.7 1 23 374 396 374 396 0.97

3 7 5.2e-06 0.00032 21.1 0.1 1 23 402 424 402 424 0.99

4 7 3.5e-06 0.00022 21.7 3.2 1 23 430 452 430 452 0.99

5 7 3.8e-06 0.00024 21.5 0.3 1 23 458 480 458 480 0.98

6 7 1.7e-06 0.00011 22.7 0.4 1 23 486 508 486 508 0.98

7 7 7.2e-05 0.0045 17.5 0.1 1 23 514 536 514 536 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.2e-05	0.0058	17.2	0.5	1	23	133	155	133	155	0.99
2	7	0.00023	0.015	15.9	0.7	1	23	374	396	374	396	0.97
3	7	5.2e-06	0.00032	21.1	0.1	1	23	402	424	402	424	0.99
4	7	3.5e-06	0.00022	21.7	3.2	1	23	430	452	430	452	0.99
5	7	3.8e-06	0.00024	21.5	0.3	1	23	458	480	458	480	0.98
6	7	1.7e-06	0.00011	22.7	0.4	1	23	486	508	486	508	0.98
7	7	7.2e-05	0.0045	17.5	0.1	1	23	514	536	514	536	0.97

Sequence Information

Coding Sequence: ATGGAAGACCTCACcaagaatataatatttacaaatgcCATAAATGGCCAACCGgctaccattcaataccaaaCTGCAGATGGCACTATACTTAAACAGCCCAAAATAGAGGGACAAAAGTCGGACCAGCAGCCCACATTTTACTATACAACAAATGGCAATGGAGCCACTGTTAATCTGGCCCAACTGGCCACCACCGAGGATAATAAGACCTGCTATATAGCGCAGCCTGTGAGCGGCTACAATTATGCTCTGGTCAATGGCATGCCGCTGAATCAGGGCACAGCGCTGGGCATAGCCACAGTAGATGCCCAGGGACGCATACAAATTGTCAACCAGAATAAACCCATCGCAGCTaCAATTTCGCCTTTGCAGAATACCATATCGAACATAAGCTTCAAGTGTGATGTCTGCTCGGCCATGTTCCCGCACCTGGCGCTGCTCAATGCCCACAAGCGTATGCACACAGACGGCAcagatcagcagcaacagcagcagcaacaacagcaacaacaacaggatgCCATCACAGTGGTCAATGCCCAGGGCTTGGTGCAAACCCAAAATATAATCACCGAAAATGGTCAAATGggtcaaatacaaattgtggCCTCCGACGCTTTGGAGTCagtacagcagcagcagcagcagactgtcatgcaacagcagcaacaacagcaacacgatACCAAGGCCAACAAATGCATCAACTGTGGGGCATTGCTGCCCCAAACGAAGCGCAAGGGACCCAAGCAAGTGCGCTGCGAGAGCTGCATGCAGGCGGaccaacatcagcagcagcaacaaatctTTGTGGCCCAAGATGGACAACTGGCTCATCCTGTGCAAATCATATCGACCACACCTCAGGCCCAAGCgcaactgcaacaaattgTGGCCCAGCAAACAGGCGGCACCACGCCCAAACGTGAAAACAGCTCCGGTTCGACGGCCCACCATCCTGTCAAGAAGCGTAACTCTCAGCAAATGGCCAAATGTCAGAAATGCAATGGTTCGGGCGTGGTTGTGGTGGGCCATAatcatacccatacccatggTGCTGGTGGCTCCGCTAAGCAGAATGCTGTGACTGTGAAGACAGAAAATCCCAGCAAACCCTTCAGCTGCAATATCTGTGGTGGTCTGTTCTCCCGCTACTCCAGTTTGTGGTCCCACAAGAAGCTGCACAGCGGCGAAAAGAACTACAAGTGCACCATTTGCGGATTGGCCTTTGCCAAGGCGGTCTATTTGAAGAATCATGCCCGCATCCACACCGGTGAAAAGCCCTACAAATGTCAGACATGTGGCATGCAATTCTCACAGTCGCCTCATCTCAAGAATCACGAACGCACCCACAGCGGCGAGCGTCCGTATGTCTGTGGCGTCTGCGACAAGGGATTCGCTCGGCATGCCACTCTGTGGAATCATCGACGCATCCACACCGGCGAGAAGCCCTACAAGTGTGAGATATGCGGTTCCGCCTTCTCCCAAGCGGCCCACCTCAAGAACCATGCCAAGGTCCACTCCGGCGAGAAGCCCTACAAATGTGAGATCTGTTCAGCGGCGTTCGCCGATCGTTTTGCTCTGAAGCGTCATCGTGGCATACATCAGAAGTATGGACAGACGGCGCCCAGGCAGACGAGCAGCGATGGCATGGTTGTGCACAAGCAGGAACTGCCTGATATGGATGACGAGGCGCAGCAGGAGGTGATTATTGGCGGCTTATAG
Protein Sequence: MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKSDQQPTFYYTTNGNGATVNLAQLATTEDNKTCYIAQPVSGYNYALVNGMPLNQGTALGIATVDAQGRIQIVNQNKPIAATISPLQNTISNISFKCDVCSAMFPHLALLNAHKRMHTDGTDQQQQQQQQQQQQQDAITVVNAQGLVQTQNIITENGQMGQIQIVASDALESVQQQQQQTVMQQQQQQQHDTKANKCINCGALLPQTKRKGPKQVRCESCMQADQHQQQQQIFVAQDGQLAHPVQIISTTPQAQAQLQQIVAQQTGGTTPKRENSSGSTAHHPVKKRNSQQMAKCQKCNGSGVVVVGHNHTHTHGAGGSAKQNAVTVKTENPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQTSSDGMVVHKQELPDMDDEAQQEVIIGGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00359640;
90% Identity: iTF_00359640;
80% Identity: -