Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000801.1:941261-950220[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-07 8.3e-06 26.1 1.8 2 23 144 165 144 165 0.97

2 9 3.4e-07 2.1e-05 24.9 1.6 1 23 171 193 171 193 0.98

3 9 4.2e-06 0.00026 21.4 1.1 1 23 199 221 199 221 0.97

4 9 9.4e-07 5.9e-05 23.5 0.7 1 23 227 251 227 252 0.95

5 9 6.3e-05 0.0039 17.7 3.3 1 23 257 279 257 279 0.98

6 9 0.00073 0.046 14.3 3.4 1 23 285 308 285 308 0.98

7 9 0.00022 0.014 16.0 2.7 1 23 314 336 314 336 0.99

8 9 5.3e-06 0.00033 21.1 0.8 1 23 341 363 341 363 0.98

9 9 0.0054 0.34 11.6 0.3 2 23 370 394 369 394 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-07	8.3e-06	26.1	1.8	2	23	144	165	144	165	0.97
2	9	3.4e-07	2.1e-05	24.9	1.6	1	23	171	193	171	193	0.98
3	9	4.2e-06	0.00026	21.4	1.1	1	23	199	221	199	221	0.97
4	9	9.4e-07	5.9e-05	23.5	0.7	1	23	227	251	227	252	0.95
5	9	6.3e-05	0.0039	17.7	3.3	1	23	257	279	257	279	0.98
6	9	0.00073	0.046	14.3	3.4	1	23	285	308	285	308	0.98
7	9	0.00022	0.014	16.0	2.7	1	23	314	336	314	336	0.99
8	9	5.3e-06	0.00033	21.1	0.8	1	23	341	363	341	363	0.98
9	9	0.0054	0.34	11.6	0.3	2	23	370	394	369	394	0.95

Sequence Information

Coding Sequence: ATGGACACCCTTTGTAGGTTGTGCTTTCAAACAGCGACGTTATTCCAAGTGCCCGGCTACAGTATACCAACGTGCGTACGCTGCTCGGAACAGTTGACAAACAATACCAATTTCCATCAGGCGGTACGCGTCGAAGGCAGCAGCTCAGCGGCAGCCGTATCTGTGGCagctgtggcagcagcagccgctgctgcctcATCCTCCACGTCCAGTGACAGCGACGCAGTGGCTCAACTTACGAACGGCAGCACTGCGGCAGCAGTTGCAgtgctgcaactgcagcagcaacatcaacagcagcagcaacaactgcaacaacagcagcaacagcagcagcaacaacaacaattgcagtCATCAAGTTCTTCCGAGAATCTACAATCGCAGGACGATTCTGAGGATGTGGATCTGATATTCAACGAAGAGGGCTCCTGCCCACTGTGTAACAAGACCTTCTCTCGCAAGTCCTCGCTCATGACGCACATTAGGAATCATTCGGCGGAACGTAAATTTGTGTGCACCTATTGCCACAAAGGCTTTACACAGGCGGCCAATTTACGAAACCACGAGCGCATCCATACCAACGATCGTCCCTATCAGTGCATTGACTGCGGCAAGACCTTCACACAAATTACAAATCTAAACAACCATCGACGTCTGCATACCGGCGAACGGCCCTTTGTGTGCAATGAGCCTGAATGTGGACGCAGTTTTGCACAGGTGACGAACCTAAACAATCATATGAAATCACACCATAAGGTCCAGCAATACTGCTGCAATGTGTGTAGCAAAAAGTTCACCCAAGTCACCTCGCTGAACCAGCATCTGCAGGTGCATTCGGGCGTCACCGGATTCTACTGTCCACGCTGCCCGGAGAAGAACTTCAAGCTGCAGTCGCAGCTGCACACGCACATGAAGACCCACGGCCTGGCCTTTCCCTATGAGTGCAGTAAGTGCGATGAGAAGTTCCTGCAGCAATCGCATTTGGATCAGCACCTGAAGATGCACGACGAGTTCAAGTTCAAATGCGATATATGCCCCAGCAGCTTCAATCAGGAGAGCCTGCTCAAGAAGCATGTGCAGCGTCATGTGGAGGGCCGGTACCTCAGCTGCCCGGTGGCCAATTGTGCCGAATCGTTTGCCGTGCGCCAGCATCTGTCCAAGCATTTGCTAACCAATCACTCGCACCACGAGCTGCCGCCGCCGAAGCGCTCGAAAAAGACTATAACACTGCAGGCGCCGCAACAGCCGCTGGCCATGATTGGTCAACCACTATCCCTGCAACACACAACTGGACAGCGTGGACGTCCgcccaaaaacaagaacaagaacgtCGCCCCTCTGTCCGCCTCGGCTATCAAAATCGAGCTCAACGAGCCACTGCACAGCCAACACATCATCAGCAGCGCCAGCGGCCTCTCCATACAGCAGCAGATCAATCAGCATATGCAGCAAcaggcggcagcggcggcggctgcgcaacagcagcaacaacaacaacagcagcagcaacatcatcatcttccCATGGGGCAGGCGGTAAAGGCGCGCTTTATACCCACAAAATAG
Protein Sequence: MDTLCRLCFQTATLFQVPGYSIPTCVRCSEQLTNNTNFHQAVRVEGSSSAAAVSVAAVAAAAAAASSSTSSDSDAVAQLTNGSTAAAVAVLQLQQQHQQQQQQLQQQQQQQQQQQQLQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCIDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQVHSGVTGFYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLSCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTITLQAPQQPLAMIGQPLSLQHTTGQRGRPPKNKNKNVAPLSASAIKIELNEPLHSQHIISSASGLSIQQQINQHMQQQAAAAAAAQQQQQQQQQQQHHHLPMGQAVKARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533229;
90% Identity: iTF_00572743;
80% Identity: -