Hdun005815.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000194.1:4566732-4568446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.3e-05 0.0039 17.7 3.1 1 23 101 123 101 123 0.97 2 11 3e-06 0.00019 21.9 3.5 1 23 129 152 129 152 0.97 3 11 3.8e-05 0.0024 18.4 0.2 1 23 158 180 158 180 0.97 4 11 0.00048 0.03 14.9 0.3 1 23 186 208 186 209 0.94 5 11 1.9e-06 0.00012 22.5 0.9 1 23 216 238 216 238 0.97 6 11 0.011 0.69 10.6 1.6 1 23 244 267 244 268 0.95 7 11 8.7e-05 0.0055 17.3 0.7 3 23 275 295 273 295 0.96 8 11 6.1e-05 0.0038 17.8 2.3 1 23 301 323 301 323 0.97 9 11 7.8e-06 0.00049 20.6 3.4 1 23 329 351 329 351 0.99 10 11 0.0036 0.22 12.2 0.6 1 23 357 382 357 382 0.93 11 11 0.0012 0.077 13.6 0.0 1 20 388 407 388 409 0.94
Sequence Information
- Coding Sequence
- ATGGTACGCAGTCGTCGCAGCATTTCCAAAGAAGATGCCGTCTCTCTGCTTACCGATAGCGGCATCTCGCTTTCATCGCCGCTGTCGGCGGCCACACGCGAATCCGAATCGGAAGCCTCACCCACGCCCACGAAGCGACGCAAGAGCAGTCTCAAAAGTTTGCAAGCCGACTACACCTTTCCCGATCCCGAGGCTGACGCTGATGTAGAGGATGTCGAGCAGGACTCAACAGATGCAGACTACGTCCAGCCATCCCCAAAAAAATCGACCCGAAAAACGCAAACGAATCTTCGAAAACAACATGTATGCAGCCACTGTTCTAAGAAATTTGGCGGTAAAACAGATCTGCAGCGGCACATTCTCATCCACTCCGATGAGCGGCCCCACAAATGTGCCAAGTGCGGGAAATGCTATCGCCAGGCGGTAAATCTCAAAAATCACATCACCACCGCCCACGAACACAAGAAGCAGTTTGCCTGCGCCCAGTGTCCCAAATCATTCGCCCTCAAGGAGCGTCTGCGGCTGCACATGCGCATTCATTCCGGCGAGAAGCCTTATCCTTGTGCACTGTGTGAAAAGCGCTTCGCCAGAGGCGGACAGctccagcagcatgTAGTATCGCATCACAAGACAAGCATTCAGCAATTCAATTGCACCAAATGCTCGGCCAGCTTCTCAACCAATGCAAATCTTCGGGTGCATATGGAACGACATGAGCAGGGCATGGAGCACAGATGCAGCATATGCGAGAATCAGTTTGCGAATGAACTGGCGCTACGCACGCATATTAATCAGGAGCACCATAAGTTGAGCCAATTGGATTGCGAGATTTGCCACAAAACTATAGAGAGGAATGAGGATCTGGCCACGCATATGCAGAAGCATGCAGCAGTGAAGACGCATGTCTGTGCGGTCTGCAATTCATACTTCACTCAGAAGTCGCAATACAATGTCCACATGCGGATGCACACCGGAGAGAGGCCATATCAGTGTGGGATTTGCCATCAAACGTTTGCCCATTCAAGTGTCCTCAAGCTGCACATTCGCAAGCACACTGGAGAGAAACCGTTCCCCTGCCAGCTCTGCACGGATGCGGTGGCATTCTCCCAGCTGGCCCATCTCAAGAATCACATGAAGAAGATACACAAGCAACATAAGCCCTACATGTGCCCTGGCTGCAATGAGTTCTTCAAAATCAAGGTGGAGCTGCAAGCGCATGCCGAAAAATGCGCCAAGTGTTCAGAGGAACAGGTCTCGAGTTCCCAGTCAGTGGATGATTATGCTCTATCAAACATTCGCTTCAATATGGCCGTGGTGCTGAAGAAGATTAGTCCGGCACAAAAGCTACGCCAGCTGGGCTATGAAAAGCGTCTCATTGATAACGTCGTCATAGCCTCCCTGAAGTTGGCCAAACGTACGACACACAATGATGCCAATTTAACGCCGCTTGCCAGGCTCCGCTTGAATGTGGATGAGTTTCTCAACTGGATTGTGCCGCCGCCTGCCATGCAGAAGTTCAGGGAGGAGCTGCTGTCAATCGACACGATACTCGAAAAGATCGCCAGCGTGTATATGAAGCAGAAGTAG
- Protein Sequence
- MVRSRRSISKEDAVSLLTDSGISLSSPLSAATRESESEASPTPTKRRKSSLKSLQADYTFPDPEADADVEDVEQDSTDADYVQPSPKKSTRKTQTNLRKQHVCSHCSKKFGGKTDLQRHILIHSDERPHKCAKCGKCYRQAVNLKNHITTAHEHKKQFACAQCPKSFALKERLRLHMRIHSGEKPYPCALCEKRFARGGQLQQHVVSHHKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQFANELALRTHINQEHHKLSQLDCEICHKTIERNEDLATHMQKHAAVKTHVCAVCNSYFTQKSQYNVHMRMHTGERPYQCGICHQTFAHSSVLKLHIRKHTGEKPFPCQLCTDAVAFSQLAHLKNHMKKIHKQHKPYMCPGCNEFFKIKVELQAHAEKCAKCSEEQVSSSQSVDDYALSNIRFNMAVVLKKISPAQKLRQLGYEKRLIDNVVIASLKLAKRTTHNDANLTPLARLRLNVDEFLNWIVPPPAMQKFREELLSIDTILEKIASVYMKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01324297;
- 90% Identity
- -
- 80% Identity
- -