Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000133.1:1769522-1770544[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.1e-06 0.00026 21.4 1.5 2 23 91 112 90 112 0.97

2 9 0.00014 0.0089 16.6 0.5 1 23 118 140 118 140 0.95

3 9 3e-06 0.00019 21.9 1.7 1 23 146 168 146 168 0.98

4 9 7.2e-08 4.5e-06 27.0 0.3 1 23 174 196 174 196 0.99

5 9 2.5e-07 1.6e-05 25.3 3.0 1 23 202 224 202 224 0.99

6 9 0.00041 0.026 15.1 7.8 1 23 230 252 230 252 0.99

7 9 3.2e-06 0.0002 21.8 6.8 1 23 258 280 258 280 0.98

8 9 0.00031 0.019 15.5 4.8 1 23 286 308 286 308 0.98

9 9 1.3e-06 8e-05 23.0 0.5 1 23 314 337 314 337 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.1e-06	0.00026	21.4	1.5	2	23	91	112	90	112	0.97
2	9	0.00014	0.0089	16.6	0.5	1	23	118	140	118	140	0.95
3	9	3e-06	0.00019	21.9	1.7	1	23	146	168	146	168	0.98
4	9	7.2e-08	4.5e-06	27.0	0.3	1	23	174	196	174	196	0.99
5	9	2.5e-07	1.6e-05	25.3	3.0	1	23	202	224	202	224	0.99
6	9	0.00041	0.026	15.1	7.8	1	23	230	252	230	252	0.99
7	9	3.2e-06	0.0002	21.8	6.8	1	23	258	280	258	280	0.98
8	9	0.00031	0.019	15.5	4.8	1	23	286	308	286	308	0.98
9	9	1.3e-06	8e-05	23.0	0.5	1	23	314	337	314	337	0.98

Sequence Information

Coding Sequence: ATGGATCCGGTAATGGCCATCACCATAAAGAGAGAAGAGAtggatgacgacgacgacgagagAGTTGAACTGGAATTGGTCAGCCCAGTGCAGGTGGAGCAAAATGACTACGAGCTTCACACAGATATCGATGTAGGGTGCATCAAAATAGAGGGAGAAGAGGATCAAACctggcagccgcagccgcgGTCACCAGCAGAAAGCCAAGTTGAGGAAGTCCATGCTCTTCTTCCCAATGAAAACGCCTCAAAAGTGCATCTGCATCCACTGAAGTGTCCCCACTGCTCAAGTGCCTTTGCCACAGAAGACAGCCTAAAGACGCACATGCGAAGACATACTGGTGAGCGGCGCCACAAATGCATTGAGTGCGGCAAGGCGTTTTTATCGCCCAACGATCTCAAACGTCACATGCTTATCCATACTGGCGAGCGACCTTTCATATGCACTCACTGCGCAAAGGCATTTATCCAGGAATCGCGACTCAAGATTCACATGCGGACACACACTGGCGAACGACCATACCAGTGCCCACACtgtccaaaagcatttgcaGAGGAGGGCAATCTGAAGAAGCACGTCCGCATCCATACAGGCGAGCGACCGTACGAGTGCCCACACTGTACAAAAGCGTTTGCGCAGGAGTGCAATCTAAAGGATCATATCCGTACTCATACTGGGGAGCGGCCCTACAAATGCCACCATTGCTCAAAGGCATTTCTTCAGGACACCCATCTCAAGAAACACATTCGAATCcacactggtgaacggccGCACAAGTGTCCCCATTGCTCCAAGACCTGCTCAACGTCCGGCGATCTAAAGAAACATATACTAACTCATACGGGTGAACGACCTCACAAGTGTCCACACTGCGCCAAAGCCTGTCTGAGCTCCGGCGATCTCAAAAGACACATCCGCACTCACACTGGCGAGCGGCCCTATGAATGTTCAAAATGTGACAAGGCCTTCGCCAGAATTGAGACTCTCAACAAGCACTTGAGTACGATGCACACCCAAACATGA
Protein Sequence: MDPVMAITIKREEMDDDDDERVELELVSPVQVEQNDYELHTDIDVGCIKIEGEEDQTWQPQPRSPAESQVEEVHALLPNENASKVHLHPLKCPHCSSAFATEDSLKTHMRRHTGERRHKCIECGKAFLSPNDLKRHMLIHTGERPFICTHCAKAFIQESRLKIHMRTHTGERPYQCPHCPKAFAEEGNLKKHVRIHTGERPYECPHCTKAFAQECNLKDHIRTHTGERPYKCHHCSKAFLQDTHLKKHIRIHTGERPHKCPHCSKTCSTSGDLKKHILTHTGERPHKCPHCAKACLSSGDLKRHIRTHTGERPYECSKCDKAFARIETLNKHLSTMHTQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -