Hdun005802.1
Basic Information
- Insect
- Hirtodrosophila duncani
- Gene Symbol
- -
- Assembly
- GCA_037043425.1
- Location
- JBAMBM010000194.1:4444101-4445907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.5e-06 0.00047 20.6 1.5 3 23 240 260 239 260 0.99 2 11 3.2e-05 0.002 18.6 2.2 3 23 280 300 278 300 0.95 3 11 4.5e-05 0.0028 18.2 1.4 1 23 306 328 306 328 0.97 4 11 6.8e-06 0.00043 20.7 2.8 1 23 334 356 334 356 0.98 5 11 4.3e-05 0.0027 18.2 1.9 1 23 362 384 362 384 0.93 6 11 1.5e-05 0.00092 19.7 4.3 1 23 390 412 390 412 0.98 7 11 2.4e-05 0.0015 19.0 4.2 1 23 418 440 418 440 0.99 8 11 3.3e-05 0.0021 18.6 1.1 1 23 446 468 446 468 0.98 9 11 1e-06 6.5e-05 23.3 1.6 1 23 476 498 476 498 0.98 10 11 2.1e-07 1.3e-05 25.5 8.6 1 23 506 528 506 528 0.98 11 11 5.2e-06 0.00032 21.1 5.6 1 23 534 556 534 556 0.98
Sequence Information
- Coding Sequence
- ATGGACCTTGTTTGCCGCGTTTGCATGGGTAGTGGCAGCTCCTCTACACTAGTGGACATATTCAGTGACCACCAAAAGGCGGAGAGCAACGACAAGGAAACGAGTCGTCTTTCGGAAATGCTGAATGAAATCACTGCGAGTGACTGCCAGTACAAAAGCGCCGATGGACTGCCCCAGCAAATATGCTTGAGCTGTGTGTTGGATGCCCagaatgcatttaaatttaagcgaAAGTGCGAGCAAAGTAATCGGcgtttttaccaaatgctaaCGGAAGCACCCGCAGATTCCATTGAAAAGAAAGACGAGGAGGTGGAGGATGACAGCGATGTTGCCAGCGAAATAGCTATGGATGACTTTGAGGCTGGTTTTGAAGGGATTGACGCAGAGGATCGTCTCTCGGAGAGTGGCAATGAAAGTCAAAGTGACAATGCCAGCTACAAAGTCAAGGAAAGCTCCAGCGTCAAAGCAGAGCCGAACACAGAACACCAGAGCTATGAATTCGTAGAGGTACTACTCTGTCCTGATAGCCCAGCGGGGATGCAGCTGCAGCCAAAAGGCGAAAGCAATGAAGATCCAATGACAAAAACCAAGGTGGGCAGGCCGCGACGCCAGAGAAAGGCCAAAGCCGCTGACACGGAAAAAGCTGCATCCATTCCTACTAAGGAGGAGGGGGAGGACGAGAGTCCAGACAGTGCCAATGCCATTCCATTGCTGTGCTCCGATTGTGGGCGCACCTTTAGAACGGAACGCTTGCTGTCAATGCATATGAAGCGGCACCAGAAAAGGAAAGGAGAGAACCAGAGTGACGAGGCTGAGCAGCATCCAACACACCTGTGTGAGACATGCGGCAGAGGCTTTAGACGCAGAGATGCCCTGAGCAAACACCGACGTGACCACATTTGCGGAAAGACGCACAAATGCCCCAACTGCGAGGAGATATTCAGCGATTACTACGATTTCAAGAATCACGTGCGGGCACACACTGCCCAGCGGCGGTTCCAGTGCCCCCACTGCCAATTGGCCTTCAAATTGCCCCACAACCTGAAGATGCACATACGCTTGCACACGGGCGAGCGGCCCTTCAAGTGCCCAGACTGTCCGCAGGCATTTGCTCAGAAGCAGCATCTCATTGCGCATTCTTATCACCATAACGGCGATCGGCCCCACAAGTGTACCCAGTGCAATAAGGCGTTTGCCTTTTACACGAATCTAAAGCTGCATCTGCGCACGCACACGGGCGAGAAGCCCTTCAAGTGCCCCCAATGCGCACAAGCTTTCGCTCACAACCACCACCTGAAAGTCCACTTGCGCATCCACACTGGTGAACGTCCTTATAAATGCACACGATGCGAGAAGTCCTTTGCCATAAACCAAACTCTCCAGAAGCACATTCAGTGGCATGACAATCAGATAGAGCGGCCATTCAAATGCACCGAGTGCGACAAATCCTTTGCCATCAACAAGTCACTCAAGAAGCATCTCCGCGAGCATGCAGAGGCCAAAGATAAGAGCCATCAGTGTACCCACTGTCCAAAGGCCTTTACCCAGAAGCAACATCTCACAAGGCATATGCGCACGCACACTGGCGAACGTCCCCACAAATGTCCCCACTGTCCGAAGGACTATTCCCTTAAGGAGCACCTGAAGCGGCACATTCGCGTGCATAATGATAAAACGGAGAATGTCAAGATTGAAAAGGAAGAAGCATCGCCATctctacatatgcatatgtag
- Protein Sequence
- MDLVCRVCMGSGSSSTLVDIFSDHQKAESNDKETSRLSEMLNEITASDCQYKSADGLPQQICLSCVLDAQNAFKFKRKCEQSNRRFYQMLTEAPADSIEKKDEEVEDDSDVASEIAMDDFEAGFEGIDAEDRLSESGNESQSDNASYKVKESSSVKAEPNTEHQSYEFVEVLLCPDSPAGMQLQPKGESNEDPMTKTKVGRPRRQRKAKAADTEKAASIPTKEEGEDESPDSANAIPLLCSDCGRTFRTERLLSMHMKRHQKRKGENQSDEAEQHPTHLCETCGRGFRRRDALSKHRRDHICGKTHKCPNCEEIFSDYYDFKNHVRAHTAQRRFQCPHCQLAFKLPHNLKMHIRLHTGERPFKCPDCPQAFAQKQHLIAHSYHHNGDRPHKCTQCNKAFAFYTNLKLHLRTHTGEKPFKCPQCAQAFAHNHHLKVHLRIHTGERPYKCTRCEKSFAINQTLQKHIQWHDNQIERPFKCTECDKSFAINKSLKKHLREHAEAKDKSHQCTHCPKAFTQKQHLTRHMRTHTGERPHKCPHCPKDYSLKEHLKRHIRVHNDKTENVKIEKEEASPSLHMHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -