Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000490.1:1286917-1289055[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.5 4.7e+02 1.7 5.6 1 23 43 66 43 66 0.90

2 10 5.7e-06 0.00036 21.0 0.6 1 23 282 304 282 304 0.99

3 10 8.1e-07 5.1e-05 23.6 2.0 1 23 310 332 310 332 0.99

4 10 2e-08 1.2e-06 28.7 0.5 1 23 338 360 338 360 0.99

5 10 3.1e-05 0.0019 18.7 2.2 1 23 366 388 366 388 0.98

6 10 8e-05 0.005 17.4 0.0 1 23 395 417 395 417 0.98

7 10 0.00012 0.0077 16.8 0.0 1 23 423 445 423 445 0.98

8 10 7.4e-08 4.6e-06 26.9 0.7 1 23 451 473 451 473 0.98

9 10 4.1e-07 2.6e-05 24.6 2.7 1 23 479 501 479 501 0.99

10 10 2.4e-07 1.5e-05 25.3 0.6 1 23 507 529 507 529 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.5	4.7e+02	1.7	5.6	1	23	43	66	43	66	0.90
2	10	5.7e-06	0.00036	21.0	0.6	1	23	282	304	282	304	0.99
3	10	8.1e-07	5.1e-05	23.6	2.0	1	23	310	332	310	332	0.99
4	10	2e-08	1.2e-06	28.7	0.5	1	23	338	360	338	360	0.99
5	10	3.1e-05	0.0019	18.7	2.2	1	23	366	388	366	388	0.98
6	10	8e-05	0.005	17.4	0.0	1	23	395	417	395	417	0.98
7	10	0.00012	0.0077	16.8	0.0	1	23	423	445	423	445	0.98
8	10	7.4e-08	4.6e-06	26.9	0.7	1	23	451	473	451	473	0.98
9	10	4.1e-07	2.6e-05	24.6	2.7	1	23	479	501	479	501	0.99
10	10	2.4e-07	1.5e-05	25.3	0.6	1	23	507	529	507	529	0.97

Sequence Information

Coding Sequence: ATGGCAGTGCAGCTAAAGAACTCGTATCAGTATCATCATTTGCCTTTGACCATAACACCCATACTCTGCCAGCCACTGATAAATCCCAGTCCGAGGCCAACTCCACCACAGGCCCCGGACCTGACGTTCCATTGCATGTGCTGTTCGGAGTTCTTTGTGCATCCGCTGGCCTTATATCAGCATATGAACTCGAAGCATCCGAATGAGACACAGACGGACCAGCAATCTGCAGAGGAGCAATCACCTGGAGGGGAACCATCAGCCGAGGAGGAGGATTATAGTTGGATATTTGAGCCTGTTTGCGAGCTAGAAGTGCCTGTGGATGCCGAAGACCAGCAGGAGACGGAGCATGAACAGGGACAAGAGGACAGCAACTCCAGCGACGAGGATGATGACGATAGCAcctctgatgatgatgattccagcagcagtagctcCAGTTCAACCGACTCTAGTGGTTCAAGCAGCACCATGCccaccatcagcagcaattCAAATACCCAGCCAAGTCAGGATGGGGCTTACGTGGAGGTGGAATCTACGTTTGTGACCCAGCATCAAATGCGTGGTTTGCTGCCGGGCTCACAGCCGAATGAGTTCCATTTGCAGACGGCAGATCCTCGAGAATCCACATCGATTATATTGCTGCAGCCCTCAATGAGCATTACGGCATTGCCTGCAGTTGCAGCGGCACCTCCTCCACCTGTTTTGCCACTAGCAACACCACTACCACCTGCTGTGGCAGACGTTATTCCTATCAAACGCCGTCGCGGACGTCGAAGCAAGGCCAACATAGCGCCTGTTGAAGGCTCACAGCCATCCACCATCAATGGGCAGAAATGTTTTCAGTGCACGCACTGCGAGGCCTCATTCCCGAACGCCGGCGATCTTTCCAAGCATGTCAGATCACATATAACGAACAAGCCGTTCCAGTGCTCCATTTGCCAAAAGACCTTCACCCACATTGGGAGCCTGAACACTCACATTCGGATTCACAGCGGCGAGAAGCCGTACAAGTGTGAACTCTGCCCTAAAGCCTTCACCCAATCCAGCAGCCTGATGGTCCACATGCGATCGCATGCGGTGAAGAAGCCGCATCAGTGTTTGCAGTGCGATAAGGGATTCATCAACTACAGCTCCTTACTGCTGCACCAGAAGACGCACACCGCGCCAGTGGAGAGCTTCGTGTGTCCCGAGTGCGAGAAGGACTTTAAGGCGGAAGCTTTGCTGGATGAGCATATGAGGATGCATACCCAGGAGTTGGTCTATCAGTGTGCCATTTGTAGTGCTGCATTCCGGGCCAGCTCGGAGCTGGTTCAGCATATGAAGGCCCATATGGGCGAAAAGCCATTCACCTGCTCGCTCTGCGATCGCTCCTTTACCCAATCGGGCAGCCTGAACATACACATGCGGATCCACACCGGCGAGAAGCCGTTCCAGTGCAAGTTATGTGAGAAATGCTTTACCCAGGCCTCTAGTTTGAGTGTCCATATGAAGATACATGCTGGCGAGAAGCCGTTTCCATGCCATATCTGCGGCAAAGCCTACAGCCAGCAGGCCTATCTCAATAAGCATATCCAGGGCCATTCCAAGTTGCTGCCGGCTCCAGCAGTTAATACTCAGCCCGGGGAAACCTTGGTCTGCATTGTGTGTGGCTCTCTGCATGCAAATGCCACGGAACTGGCTATACATGTGACACAGAGGCATGCGGCACTCTTGGATAACATGAAGCAGGCCACAATGGCAGCTCCTATGCCTGCAGCTTCTACTCCTGCTGCAGTAAGTGAAAAATGCAGcgtccaacagcaacagcaggcctACATGCAAAGGGTTCAAACCATGCTGcagcaaataaatcaattcGATTCGGCTGGCGAAgatgaggaagaggaggaggatgaagacgacgatgacgacgagtCGGAGCCAGACGACCACTCAGCCcaggagcaagagcaacagcaaataaagcaggaggaggagcagcatcTGTCGTCGCAACTCGTTGCCGATGATACCGATATGGACATCTATTACGATATTCCCGGTGATTTTGCCGATATGGAAGTGGGTTGCCAAGAGGAAATCTGCGGCGATTTCGATGACTATGCTGCAGAAGAGGAAATTTATACCGCCTAG
Protein Sequence: MAVQLKNSYQYHHLPLTITPILCQPLINPSPRPTPPQAPDLTFHCMCCSEFFVHPLALYQHMNSKHPNETQTDQQSAEEQSPGGEPSAEEEDYSWIFEPVCELEVPVDAEDQQETEHEQGQEDSNSSDEDDDDSTSDDDDSSSSSSSSTDSSGSSSTMPTISSNSNTQPSQDGAYVEVESTFVTQHQMRGLLPGSQPNEFHLQTADPRESTSIILLQPSMSITALPAVAAAPPPPVLPLATPLPPAVADVIPIKRRRGRRSKANIAPVEGSQPSTINGQKCFQCTHCEASFPNAGDLSKHVRSHITNKPFQCSICQKTFTHIGSLNTHIRIHSGEKPYKCELCPKAFTQSSSLMVHMRSHAVKKPHQCLQCDKGFINYSSLLLHQKTHTAPVESFVCPECEKDFKAEALLDEHMRMHTQELVYQCAICSAAFRASSELVQHMKAHMGEKPFTCSLCDRSFTQSGSLNIHMRIHTGEKPFQCKLCEKCFTQASSLSVHMKIHAGEKPFPCHICGKAYSQQAYLNKHIQGHSKLLPAPAVNTQPGETLVCIVCGSLHANATELAIHVTQRHAALLDNMKQATMAAPMPAASTPAAVSEKCSVQQQQQAYMQRVQTMLQQINQFDSAGEDEEEEEDEDDDDDESEPDDHSAQEQEQQQIKQEEEQHLSSQLVADDTDMDIYYDIPGDFADMEVGCQEEICGDFDDYAAEEEIYTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -