Hdun015530.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila duncani
Gene Symbol
su(Hw)
Assembly
GCA_037043425.1
Location
JBAMBM010000820.1:272837-275917[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00079 0.049 14.3 2.2 1 20 232 251 232 253 0.94
2 12 3.3e-06 0.0002 21.7 0.4 3 23 304 325 302 325 0.93
3 12 0.042 2.6 8.8 0.1 1 23 331 353 331 353 0.95
4 12 8.9e-07 5.5e-05 23.5 2.5 1 21 360 380 360 381 0.95
5 12 3.8e-06 0.00024 21.5 0.6 2 23 393 414 392 414 0.96
6 12 0.00012 0.0077 16.8 5.3 1 23 425 447 425 447 0.99
7 12 9.5e-05 0.006 17.1 0.9 1 23 453 475 453 475 0.97
8 12 1.1e-05 0.00069 20.1 0.7 1 23 481 503 481 503 0.98
9 12 1.8e-06 0.00011 22.6 3.0 1 23 509 531 509 531 0.98
10 12 0.00059 0.037 14.6 1.9 1 23 535 557 535 557 0.96
11 12 1.3e-05 0.00081 19.9 0.2 1 21 563 583 563 587 0.92
12 12 2.1e-05 0.0013 19.2 0.4 3 23 604 625 602 625 0.96

Sequence Information

Coding Sequence
ATGAGTGCCTCCAAGGAAGGAAAGAAGACAGAAGCTGCTCCGGCAGATAAGATTACCAGCAGCAGTGTGTCGGCCAATGCAGGTAAAGTAGTGAAAATACTGGAGCAGATTTCGCCACCCAAGGATAAGCGAAAAACCAACAGCAAAAGTGGGAGTGGCACACGTATGAAACTGCTCAACGATGTGTCGACGCCTGTTGTGAAGCAAGAGAAGCGTGCGGCCCGCATACAAATACTTAACGATGAGACCTTGTCCACACCACCGAAAGGCGACAAGCGCGGCACATCGGCATCGAAGAAAACCGCCGCCAGCCCCGCTAGATCGGCCGTCAAGATTCTAAATGAGAAGCGACCGGCCTTGGCCTCCCCAACAGCATCTGTAGTGGAGGCGACCAATATAAAGACTCCGACCAACAATAAGAAAATGGATCATTATGTGATGGCGGTGAAGAGCGAGAATAGCACATCGAACAAAACAGTGTCGACTGTGGTTTTGGAGGATGGCGACACCATTGATTTCATACTCGCCGATGATGAAGAATTGGAGCCTGGCGCCATCATACCTAATGGTGATGGGTTCGTTGTCGACGAAGCCGAAGAAGAGGACGGCGACGAGAATGATGAAGGGGGCGAGGGGGATGGGGACTCTATGCCTACCGGCGACAACAATACCGACATCAAGGAGATGGTGGAACATGTTTGCGGCAAGTGCTACAAGACGTTCCGTCGCGTGAAGAGTCTGAAGAAGCACTTGGAGTTCTGTCGCTACGACAGTGGCTATCATCTGCGCAAAGCGGACATGCTGAAGAACCTCGAGAAGATCGAAAAGGATGCCGTGGTGATGGAGAAAAAAGACATATGCTTCTGCTGCAGCGAGAGTTACGATACCTTCCATTTGGGCCATATAAACTGCCCAGATTGCCCCAAGTCCTTTAAGACGCAGACCAGTTACGAGCGTCATATTTTCATCACTCACTCGGAGTTCAACGATTATCCCTGTTCCATCTGCAATGCCAAGCTGCGCAGTGAGGCACTGCTAAAGCTTCACGAGGAGCAGCACAAATCTCGTGGCAAGCCATTCGCTTGCAAGATCTGCGGCAAGGACTTTACCCGCTCCTACCACCTTAAGCGCCATCAGAAATATTCATCGTGCTCGGCGAATGAGAACGATACGATGAGCTGCAAGGTCTGCGATCGCGTCTTCTATCGCTTGGACAATCTCCGTGCCCATCTCAAGCAGCATCTGGGAACACAGGTGATAAAGAAACCGGAGTACATGTGTCATGTTTGCAAGAACTGTTTCTACAGCCTGTCCACACTCAACATACACATTCGCACCCATACAGGTGAGAAGCCCTTCGATTGCGATCTGTGCGACAAGAAGTTTTCCGCCTTGGTGGCTCTCAAGAAGCACCGACGATATCACACAGGCGAGAAGCCCTACAGCTGCACAGTGTGCAACCAATCCTTTGCCGTCAAAGAGGTGCTGAATCGCCACATGAAACGCCACACAGGTGAACGGCCACACAAGTGCAATGAGTGCGGCAAGAGCTTCATCCAGGCTACCCAGTTGCGAACGCATTCCAAGACCCATATGCGTCCATTCGCCTGTCATTTGTGCGAAGAGAAATATAAGACGGAGAAACAACTAGAGCGCCATGTCAAGGATCACACGCGCCAGAGGCGTTTCGCCTGCTCGGAGTGCAAACGCAGTTTCCGCACCAATGGCTTGCTCAAGGCTCACATGGATGCTGGCGATCACACAGTAAAGCCCAAAGCCAAACGCACAAAATTCATCGAACGCACGGACTGCGCCATCTGCGACAAGAATTTCGACAGCACCGACACCCTGCGGAAGCACATACGCAGTGTCCACGAATGCGATCCGGATGATATTTTTGGCACCGATCCGCCCGCTGCCAAACGCTCTAGGAGGTCGAAAAAATCGGACAAGTCCATGGAAATGGAGACGGGCGAGGAGGACCCTAACCAGGTGGTCAACACCTCCTCGGGTTCGCTTATTTCCAGTCAAACTGACGAGAATGGAGTGGTGGTGCGTGAATTTTTGGTAGACGATGCCCAGACCATTGTACTGGAGAATGAGACCTACACCATCCTGCCCTTGGATGGGCCAATCACCAGCGACCAGCCGCCCGCTGACAAATCAAAGCACGAGTCCAATGATAAAGACAAGGAAAAACAGCCACAAGTTCCGCCTGTGGTCAAGAAGGAGCAGCGCAAATCTTTGGCCGCCAGCTTGGCCGCTGCCATTGCTGATAATCTGGAAGAGTCGCTGAGCGAAGAAGAATTCAATGGCGAAGTACTCACTGAGGAGGATCTGAAGCTCAAGGGGAATGTGGCCAAATTGATTGACATGCTGGTGGATCCGCCAATTCTTGAGAAATACGGCTGGCCCAACACCACCGAGGAGACAGTGCTCTGCAAGGTCATTGAGAACTGCGGCCACGATCTGACCAAGGGCGGCGAAAACTACGCTGAGCTGGACTATGGCAGTCGTATGCGCGAGTACTGCAAGCTCCTCTTCACGGTGGTCATCCACAACGATTCCATCAAGTCGCTGCTCAACAATTTCCCCATCGACGATGTGATCGAGTATGTGCTCGGCGAGGAGGACCAAGACcaggaagaggaggaggaggaggaggaagatgACAATAAAGAAAAGCAGACCGAAATGGAGCCCGAAAACGATGTCGAAGAGTCAGGCACCAAGACGGATGAGAAAACCTAG
Protein Sequence
MSASKEGKKTEAAPADKITSSSVSANAGKVVKILEQISPPKDKRKTNSKSGSGTRMKLLNDVSTPVVKQEKRAARIQILNDETLSTPPKGDKRGTSASKKTAASPARSAVKILNEKRPALASPTASVVEATNIKTPTNNKKMDHYVMAVKSENSTSNKTVSTVVLEDGDTIDFILADDEELEPGAIIPNGDGFVVDEAEEEDGDENDEGGEGDGDSMPTGDNNTDIKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSEALLKLHEEQHKSRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRAHLKQHLGTQVIKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHMRPFACHLCEEKYKTEKQLERHVKDHTRQRRFACSECKRSFRTNGLLKAHMDAGDHTVKPKAKRTKFIERTDCAICDKNFDSTDTLRKHIRSVHECDPDDIFGTDPPAAKRSRRSKKSDKSMEMETGEEDPNQVVNTSSGSLISSQTDENGVVVREFLVDDAQTIVLENETYTILPLDGPITSDQPPADKSKHESNDKDKEKQPQVPPVVKKEQRKSLAASLAAAIADNLEESLSEEEFNGEVLTEEDLKLKGNVAKLIDMLVDPPILEKYGWPNTTEETVLCKVIENCGHDLTKGGENYAELDYGSRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGEEDQDQEEEEEEEEDDNKEKQTEMEPENDVEESGTKTDEKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-