Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000098.1:3670445-3673556[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00021 0.013 16.0 0.3 5 23 221 240 220 240 0.94

2 17 0.0013 0.084 13.5 0.2 2 23 248 269 247 269 0.96

3 17 0.067 4.2 8.2 0.2 2 23 301 322 300 322 0.95

4 17 0.0019 0.12 13.0 0.9 3 23 411 432 409 432 0.96

5 17 0.021 1.3 9.7 1.9 1 23 439 461 439 461 0.96

6 17 0.0062 0.39 11.4 2.7 1 23 469 491 469 491 0.95

7 17 0.00015 0.0093 16.5 0.6 1 23 499 522 499 522 0.96

8 17 0.00074 0.047 14.3 1.9 2 23 530 551 529 551 0.96

9 17 0.0053 0.33 11.6 0.0 2 21 578 597 577 598 0.94

10 17 0.0045 0.28 11.9 2.2 1 23 649 672 649 672 0.97

11 17 0.0073 0.45 11.2 0.5 1 23 709 732 709 732 0.96

12 17 0.00042 0.026 15.1 1.5 2 23 771 793 770 793 0.95

13 17 0.00065 0.04 14.5 0.1 1 23 807 829 807 829 0.95

14 17 3.2e-05 0.002 18.6 1.3 1 23 835 857 835 857 0.99

15 17 2.3e-06 0.00014 22.2 4.2 1 23 863 885 863 885 0.97

16 17 4.8e-05 0.003 18.1 3.8 1 23 891 913 891 913 0.97

17 17 2.9e-05 0.0018 18.8 0.5 1 23 919 943 919 943 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00021	0.013	16.0	0.3	5	23	221	240	220	240	0.94
2	17	0.0013	0.084	13.5	0.2	2	23	248	269	247	269	0.96
3	17	0.067	4.2	8.2	0.2	2	23	301	322	300	322	0.95
4	17	0.0019	0.12	13.0	0.9	3	23	411	432	409	432	0.96
5	17	0.021	1.3	9.7	1.9	1	23	439	461	439	461	0.96
6	17	0.0062	0.39	11.4	2.7	1	23	469	491	469	491	0.95
7	17	0.00015	0.0093	16.5	0.6	1	23	499	522	499	522	0.96
8	17	0.00074	0.047	14.3	1.9	2	23	530	551	529	551	0.96
9	17	0.0053	0.33	11.6	0.0	2	21	578	597	577	598	0.94
10	17	0.0045	0.28	11.9	2.2	1	23	649	672	649	672	0.97
11	17	0.0073	0.45	11.2	0.5	1	23	709	732	709	732	0.96
12	17	0.00042	0.026	15.1	1.5	2	23	771	793	770	793	0.95
13	17	0.00065	0.04	14.5	0.1	1	23	807	829	807	829	0.95
14	17	3.2e-05	0.002	18.6	1.3	1	23	835	857	835	857	0.99
15	17	2.3e-06	0.00014	22.2	4.2	1	23	863	885	863	885	0.97
16	17	4.8e-05	0.003	18.1	3.8	1	23	891	913	891	913	0.97
17	17	2.9e-05	0.0018	18.8	0.5	1	23	919	943	919	943	0.90

Sequence Information

Coding Sequence: ATGAATTTGCCGACAATTTGTCGCACATGCGATACCAAGGACACCGACAAACTTTTCAAACTTTCAACACCCACAAAGAAGTATCCCGATAAATTACTTTCTGACATCCTAAGCGAGCTAACCGATATCGATCTAAGTGTAACTGCTGGACAGAAGATGCCACAATGCCTGTGCAGCAAGTGTACGTTGAAACTGATTGGGGCTTATTACTACGTTAAGCAGGCTTTGGTGGCCAATGAGCTATTGATGAACCATCTAAACAAATTCCTGGTGGCGGCATCGCTGCCCACAGACTGCCTGCAAGAGGTACCAATGGAGCTGTGTGCCGAGCAGCCTGTAGAGATTAAAATCGAGAAAGAGGATGAGGATGCCGATGTTGATACGACATGCACTGAGCTGCCCACATTTGAGACGGAGCCAGAAGAAGATGGCGATGATAAGCACAACAAGAAATCCATGGACCCACTTATTATGCTGGATGCAGTGAAAAAAGAATCAGAATCATCAGTCAGATCAACCAGTGGACCTGAATTGGCCGAGACCAAGGCTGATAACGAAGATGATGAATCACTCGATGACTTACCGCTGCAACAGCGCGCCCAAAAATGGAAGACAAAGAGCCGACAACGTGGTGTGAGCCGCCCACATTTCAAGCGCAAGGAATGCCCCAAGAGCTTCAAACGCGCCGAGTACTTAAAGCAACATCAGACACGCGTTCACCGGGCTGACAAGAGTTTGTTGTCCTGTTCCCTCTGCATAAGGAAATTCACGCGAAGTGAAGCTCTGGAAGCCCATCTTAAGGTGCACAGAAACTCGAAACGCTCGGTTAATTTGGGTGAGCGCAAGAAGGCCAAGGACATAGACGTCAACCTGTGCAAGCCCCACGGCTATAAGCGCATCGAGTGCATGATCTGTCTGACCCAGTTTGAAAAAATGGCCGATTTGCGGCGCCATCTTGAGAATCATCCCGAAATCGTTAGCTTTGGAGAGCGACCGAATGTGGTGGAGTCCAGCGGGCTGGCGGAGCTTTTCTATCCGGATGCCAAGGATGTAAGCGAGGAGCAACTGAAGGTGCTCATAGCAAAGGACCTAAAGGCGGGCATCTATCATCGTTTCTATTCCATAACGAATCAATCGGGCTACGAAATGGATCTGGACAGCACCGAAACTGAAAGCGAAGGAGAGGGCGAGGCCCATGAGGCGGCCACCATCAACCATCGAAAGTACGGCTGCGAGCTGTGCCGCGAGAGCTTCCAGCGCAGATACCAGCTGTACGATCACCAGCGACTGACTCATCCCTGGTCTGAGGCACCTCACGTTTGCGGTCGCTGCGATGCGCGCTTCGTAAGCCTGCAATTGCTCCAACATCACAATGAGACCCACTGCAAGAATGCCCAGAAGAGATTCCTCTGCCATAAGTGTCCGCGACGCTACCGATGGAAAGGCAACCTCAAAAGTCACGTCCGCGATCACCTGCAGAACCAAAATCAGACCTTCAAATGCAACCAATGCCCACTTGTATTCGATAAAAAGAAGAGTCTGACTGTCCATGTCATCAGCACGCATGCCGATGAATACAAAGTGATTCCATGCCAGTGGTGCTCCCGTAAATTCATCCGCCACGACTATCTGTTGACGCATCTGAAGCGTCATGGCATCAAAAAGCAGGACATTCCTCTGGCAGAGACTTTGATTGCGGCCACATCGAAACCTAATGGACCCAAGCAGATCACCTGCAAAATTTGCAACCTCCAATTCGAGCGCATCGTCGATCTGCGCGCCCACATTCAGCTGGAACTGAAGCTATCCTCGTCACTGCAGCAAAGCTACGATTCGCCCCAAAACTACTCCATCACGAATGAGTCCGGCTTTGAACTGCATCTGGGCGACTCCGAAACGGATGATGAAATGCAGTCCTCTGCGGGTAGAGGAGCACTCTTCGTCTACACCTGCGAGCTGTGCAGCATACAGTGCAGGCGCAAATATGAGATGATTCAGCACCAACGCGCCATGCATCAGTTCGATAAGATGCCACACGAGTGCGACACCTGCATCTTTAAGTCTGTTTCTAAGAGCATAATGGATCACCACAGACGCGAGCAATGTCACAGCACGGAGAAGAAGTACGCTTGCCGTATTTGCAGCTTCAAGTTCATGTGGCCCGAGAACCTGCAGCAGCACATGCGCCTCCAGCATGGTGGTGCTATGGAAGGGGAAGAGGTTAAAGCGACAACATCAAAGCCAATCGGACAGCCCAATGATCAGGTGGCTGCTCAGGCACAGTCTACTGAGGATGGACTCCAGCTGCTGCAGTGTCCGCATTGCGATCGCACTTACCAAATGAAGTCGCGGCTTAGTAATCATATTAGGGATGTCCATGTGAATGGCGGTAGAAAGCGCAAGGAGCCCATCCAGAAATTCCTATGTTCGCTGTGTGGCATAAGGACGATTTCCGCCGCCTCGCTGGTGGTGCATATGCGTCGCCACACGGGCGAGAAGCCCTTTAAGTGTGATCTGTGTGAGATGCGCTTCCCAAAGCGTTCAGAATTGACTTTGCATCGGCGTATGCACACCGGCGAGAAGCCACACCATTGCACCGTGTGTGGCAAGGACTTTGCCCGATCCGACAAACTGAAGAGGCACATGCTTACCCACAGTGGCCTGAAGCCACACAAGTGCACCTACTGCGAGAAAAGCTATCGTCAAGCCAAGGATCTGAAGCTACATTTGCAGCAGCACACCGGGGAGTGTCCGTTTATCTGCGGCACCTGCGGTGAGCGCTTCATTCAGAGCAGCAGCCTGGAGAAGCATCGCATGATGCGACGCCACTTTGATGAAGTGGAGGAAAAGAGCTCCAATGCTCCAGCGTGA
Protein Sequence: MNLPTICRTCDTKDTDKLFKLSTPTKKYPDKLLSDILSELTDIDLSVTAGQKMPQCLCSKCTLKLIGAYYYVKQALVANELLMNHLNKFLVAASLPTDCLQEVPMELCAEQPVEIKIEKEDEDADVDTTCTELPTFETEPEEDGDDKHNKKSMDPLIMLDAVKKESESSVRSTSGPELAETKADNEDDESLDDLPLQQRAQKWKTKSRQRGVSRPHFKRKECPKSFKRAEYLKQHQTRVHRADKSLLSCSLCIRKFTRSEALEAHLKVHRNSKRSVNLGERKKAKDIDVNLCKPHGYKRIECMICLTQFEKMADLRRHLENHPEIVSFGERPNVVESSGLAELFYPDAKDVSEEQLKVLIAKDLKAGIYHRFYSITNQSGYEMDLDSTETESEGEGEAHEAATINHRKYGCELCRESFQRRYQLYDHQRLTHPWSEAPHVCGRCDARFVSLQLLQHHNETHCKNAQKRFLCHKCPRRYRWKGNLKSHVRDHLQNQNQTFKCNQCPLVFDKKKSLTVHVISTHADEYKVIPCQWCSRKFIRHDYLLTHLKRHGIKKQDIPLAETLIAATSKPNGPKQITCKICNLQFERIVDLRAHIQLELKLSSSLQQSYDSPQNYSITNESGFELHLGDSETDDEMQSSAGRGALFVYTCELCSIQCRRKYEMIQHQRAMHQFDKMPHECDTCIFKSVSKSIMDHHRREQCHSTEKKYACRICSFKFMWPENLQQHMRLQHGGAMEGEEVKATTSKPIGQPNDQVAAQAQSTEDGLQLLQCPHCDRTYQMKSRLSNHIRDVHVNGGRKRKEPIQKFLCSLCGIRTISAASLVVHMRRHTGEKPFKCDLCEMRFPKRSELTLHRRMHTGEKPHHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQSSSLEKHRMMRRHFDEVEEKSSNAPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00804552;
90% Identity: iTF_00804552;
80% Identity: -