Basic Information

Insect: Hirtodrosophila duncani
Gene Symbol: -
Assembly: GCA_037043425.1
Location: JBAMBM010000133.1:1811110-1813272[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4e-07 2.5e-05 24.6 0.9 1 23 74 96 74 96 0.98

2 15 2e-05 0.0013 19.3 0.4 1 23 102 124 102 124 0.98

3 15 7.9e-05 0.0049 17.4 2.5 1 23 165 187 165 187 0.98

4 15 1.8e-05 0.0011 19.4 5.2 1 23 193 215 193 215 0.97

5 15 1.9e-06 0.00012 22.5 6.1 1 23 290 312 290 312 0.99

6 15 2.9e-06 0.00018 21.9 2.1 1 23 318 340 318 340 0.99

7 15 8.6e-07 5.4e-05 23.6 3.5 1 23 346 368 346 368 0.99

8 15 0.0043 0.27 11.9 2.6 1 23 374 397 374 397 0.96

9 15 4.2e-06 0.00026 21.4 3.9 2 23 504 525 503 525 0.97

10 15 0.00026 0.016 15.8 3.2 1 23 531 553 531 553 0.94

11 15 6.8e-08 4.3e-06 27.0 6.2 1 23 559 581 559 581 0.99

12 15 0.022 1.4 9.7 3.0 1 19 587 605 587 610 0.90

13 15 7.2e-06 0.00045 20.7 4.1 1 23 626 648 626 648 0.98

14 15 8.3e-07 5.2e-05 23.6 2.2 1 23 654 676 654 676 0.98

15 15 0.00018 0.011 16.2 2.0 1 23 682 705 682 705 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4e-07	2.5e-05	24.6	0.9	1	23	74	96	74	96	0.98
2	15	2e-05	0.0013	19.3	0.4	1	23	102	124	102	124	0.98
3	15	7.9e-05	0.0049	17.4	2.5	1	23	165	187	165	187	0.98
4	15	1.8e-05	0.0011	19.4	5.2	1	23	193	215	193	215	0.97
5	15	1.9e-06	0.00012	22.5	6.1	1	23	290	312	290	312	0.99
6	15	2.9e-06	0.00018	21.9	2.1	1	23	318	340	318	340	0.99
7	15	8.6e-07	5.4e-05	23.6	3.5	1	23	346	368	346	368	0.99
8	15	0.0043	0.27	11.9	2.6	1	23	374	397	374	397	0.96
9	15	4.2e-06	0.00026	21.4	3.9	2	23	504	525	503	525	0.97
10	15	0.00026	0.016	15.8	3.2	1	23	531	553	531	553	0.94
11	15	6.8e-08	4.3e-06	27.0	6.2	1	23	559	581	559	581	0.99
12	15	0.022	1.4	9.7	3.0	1	19	587	605	587	610	0.90
13	15	7.2e-06	0.00045	20.7	4.1	1	23	626	648	626	648	0.98
14	15	8.3e-07	5.2e-05	23.6	2.2	1	23	654	676	654	676	0.98
15	15	0.00018	0.011	16.2	2.0	1	23	682	705	682	705	0.95

Sequence Information

Coding Sequence: ATGGACGGTATTACTGTTAAGATGGAACTCCGAGACGATGAGAACTTTGAATCGCCACCAGAAGAACTCGACCTATATTCTTGCATTGATGTGAGCTGTGTCAAAGTTGAGGGAGAGGAGGATGAAAGCAGCCAGCTACAGCCAGAATCACTGCCACAAAAACAGCCGGATGCATTTCTAGTACAGAAGCACCAAGAAACTCACACTGGCGAGCGGTCCCACGAATGTCTCGAGTGCAGCCAAAGCTTTCCATCGCCCAGCGAGCTGAAGCGCCACATTAGGACTCATCCTGGCAAACGTCCTTACCCCTGTCTATACTGCTATAAGTCCTTTGTAGTGGAGGCGAGCCTTAAGAATCACGTCCGTACCCACACTGGCAAACGCCCGAACCTCTTGAACAAGAAGCAAGAGAAAGACAAAGCCATCGAATCGCATAAAATTGAGCTCACCAAACGAATCAATCGGAAAGCAACGAAAACTGGCGAACGCCGCCACAAATGTTGCGAGTGTGGCAAAGGCTTTCCAGCACCCAGCATGCTTAAGCGGCATTTTATAACACACACCGGCGAACGGCCCCACGCATGTCCACACTGTTCCAAGACCTTTCAACTGCCTTCACATCTCAAGGTACACTTGCGAACGCACTCTAGAGAAGAAACGCTCCCTGGTCAGGTAGAAGAATACCAAGAGAAGCACGATGAGCTTATAGAATCAAGAGAAGAAGAGAACAGGCTTCACTCTGACTTTGATCTCAGCTGTGTGAAAAGAGAAGGAGAACAGGACAAAAACAGCGATCGACAGCCACAGTCCGCGCCCTCAGATAGATATGAAGATATGAAAACGCTTCCAAAGATCGTAAATAAACCATTTAAGTGTCCACATTGCACAATGACATTTGACCGCAAGTATCATCTCAACGTGCACATTCGAAAACACACAGGGGAACGGCCATACAAATGCCTCGAGTGCAGCAAAAGCTTCACGGCTCCCAACCAGCTGAAGCGTCACCGTAAGACGCATACCGGCGATAGGCCCTACAAATGTCCGCACTGTCCCAAGACATGTTCATTGCGTGCAAATCTCAAGGATCATATGCGAATTCACTCCAGTGAACGGCCGTATATATGCTCATTATGTAGCCGAGCATTTTCCAGACTTCCAAGTCTCAAATATCACTGTAGAACAATGCATCCCGAGATAACCACAAATTCTAAGCAAAAGGAACAAAAAGAGAAGCACCTGACTAAGATGGAACACCATAACAGTTATGATAATGATGAGCTTCATTCTGAAATTGATGTGGGCTGTATCAAAATAGAGGGTGAAGAGGAAAATGCCAGCGAAGGACAGCCAGAGTCAGCGGCACAGCCTTCGAAACACCAAGAGGAGGACGATGAGCTGTTCGAATCACAAGAAGGAGAACAGAAAGAAACCAGCGAAGGACTGCAAGAGTCACCGCCATCCGCTAAAGTTGGGGAACCGCCACGAACCACCTCAGAAAACCCAATCGAGTGTCCACACTGCCCGCAATCTTTTGTTCATCAATTTCATCTGAATATCCACATACGAAAACACACAGGGGAACGGCCCTACAAATGTTTCGAGTGTGGCAAAGGTTTTACAGCGCTCAGCCAGCTAAATCGTCACTGTACAACGCACACAGGGGAACGGCCCTACAAATGTTCACACTGTAACAAAACCTTTGCTCGGAATGCGCATCTCAAGGAACACATGCGGACTCATACTAGTGTACGGCCACATGTCTGTCCCATATGCAGCAAGGCGTTTTCCAGGCTTCAAGTTCTAAAATATCACTGTTACAAAATGCATCCCACTTTAGTGGTCAATTCTAAGCTGGAAGAGCAAGAGGAGAAGCACAAGTGTCTCGAGTGCAACAAGAAGTTTCAGTATTCCAGCCTCTTGAAGCGCCACATTAGAATACACACTGGCGAACGGCCCTACGCCTGTGCAAACTGTTCCAAAACCTTTGGTTCGTCCTCACATCTCAAGGAACACATGCGAACGCACTCTAGCAAATGGACCCATATATGTTCCATATGCAGGCAAGCGTTTTCCAGATCTCAAAGTCTGAAAGCCCACACGAGCAAAATGCATCCCAAAGAGCTAGAAGAGGCAGAAGAGATATGCCCGCCAGAATCTTAA
Protein Sequence: MDGITVKMELRDDENFESPPEELDLYSCIDVSCVKVEGEEDESSQLQPESLPQKQPDAFLVQKHQETHTGERSHECLECSQSFPSPSELKRHIRTHPGKRPYPCLYCYKSFVVEASLKNHVRTHTGKRPNLLNKKQEKDKAIESHKIELTKRINRKATKTGERRHKCCECGKGFPAPSMLKRHFITHTGERPHACPHCSKTFQLPSHLKVHLRTHSREETLPGQVEEYQEKHDELIESREEENRLHSDFDLSCVKREGEQDKNSDRQPQSAPSDRYEDMKTLPKIVNKPFKCPHCTMTFDRKYHLNVHIRKHTGERPYKCLECSKSFTAPNQLKRHRKTHTGDRPYKCPHCPKTCSLRANLKDHMRIHSSERPYICSLCSRAFSRLPSLKYHCRTMHPEITTNSKQKEQKEKHLTKMEHHNSYDNDELHSEIDVGCIKIEGEEENASEGQPESAAQPSKHQEEDDELFESQEGEQKETSEGLQESPPSAKVGEPPRTTSENPIECPHCPQSFVHQFHLNIHIRKHTGERPYKCFECGKGFTALSQLNRHCTTHTGERPYKCSHCNKTFARNAHLKEHMRTHTSVRPHVCPICSKAFSRLQVLKYHCYKMHPTLVVNSKLEEQEEKHKCLECNKKFQYSSLLKRHIRIHTGERPYACANCSKTFGSSSHLKEHMRTHSSKWTHICSICRQAFSRSQSLKAHTSKMHPKELEEAEEICPPES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -