Hdun004600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila duncani
Gene Symbol
-
Assembly
GCA_037043425.1
Location
JBAMBM010000133.1:1787983-1789536[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.6e-06 0.00054 20.4 0.4 1 23 47 69 47 69 0.98
2 13 3.2e-07 2e-05 24.9 4.5 1 23 75 97 75 97 0.99
3 13 2.8e-08 1.8e-06 28.2 1.4 1 23 103 125 103 125 0.99
4 13 1.3e-06 8.4e-05 23.0 0.8 1 23 131 153 131 153 0.99
5 13 2.1e-05 0.0013 19.2 0.4 1 23 159 181 159 181 0.99
6 13 3.2e-06 0.0002 21.8 3.2 1 23 187 209 187 209 0.98
7 13 3.3e-07 2.1e-05 24.9 2.6 3 23 315 335 314 335 0.98
8 13 0.00038 0.024 15.2 5.4 2 23 342 363 341 363 0.97
9 13 6.4e-08 4e-06 27.1 0.1 1 23 369 391 369 391 0.99
10 13 2.2e-06 0.00014 22.3 0.2 1 23 397 419 397 419 0.99
11 13 8e-07 5e-05 23.7 1.3 1 23 425 447 425 447 0.99
12 13 1e-05 0.00066 20.2 4.3 1 23 453 475 453 475 0.98
13 13 8.9e-07 5.5e-05 23.5 0.5 1 23 481 503 481 503 0.98

Sequence Information

Coding Sequence
ATGAACACAGTTATTGTCAAGCAAGAGCTAGCAGAAGACGACAAAGTACAAATTAAACTGGACACATCGCTGGAAAGCATTGAAGTAGAATTGGTAGCAGCCAATGCGAGCCCTGGCACACAGAACTCGGACCGGCGCTTCAAATGTGCACAGTGTCCCCAGGCTTTTACTGAGAACAGATTACTGAAGCGTCACATTCGAGGTCATACCGGTGAAAGGAGTTTTAAGTGTCCTCATTGCCCAAAGGGATTTACTGACAGTTCCAATCGCAACCATCACATTAGGACTCATTCCTCTGATCGACCCTACAAATGTCCAGAATGTTCCAAGTCTTTTATCAGGAACTACTTTCTACAGCGTCACATTCGAGTTCACACCGGCGAGAAACCCTATCAATGCCCGCATTGTTCAAAGACGTATTCACAGGGGTCCCAACTTGCAATCCACGTTCGCATCCACACTGGTGAACGACCCTATCAATGTGCGCAGTGTCCGATGTCATTTGCTTATAACTCTGTACTCAAGCAACACATTCAACGTCACACTGGGAAACGACCGTTCAGCTGTCCCCACTGTCCAAAGACATTTTCCCGACACGCGTCTGCCAAGAAACACATACGCGCACATACCGAACACAAGGAAATGGAGAAAATGGACCCTAAAGATCAGACCGAGACGAAAGAGCCGCCGGATGAGTACGAGCTGCATACAGAAATCGATGTGGGATGTGTGAAAGTAGAACTGGAAGACGATTCAAGTACAGAGCTGAATTCAACGCCAAATGAAGGCGAAAATAGTTTCAAAGACGAAGTCCAAAATACGTTTTCTGGCGAAGCAAATACCAAGGAACACATGCAAGAACTTCGCGTCAACAAACCAAAGGATGATAAGAGTCAAGCAACCTTGATGGACAACCCAAAACCAAAGGCCACCGCAAACATCTGTTCCGTGTGTGGTCGGGATTTTAAACATAAGAGCACATTGAGGGTGCATATGCGGACGCATACTGGCGAAAAGCCTTGTCAGTGTCCACATTGTCCAAAGGCCTTTGTCTGCATGTCCTATCTAAACAATCACATTAGGACTCATTCCTCTGATCGACGCTACAAATGTCCCCAGTGTCCCAAGGCCTTTGTGGTGAACAGCGAACTGAAGACGCATATTCGAGTTCATACTGGCGAAAAGCCCTATAAGTGCCCGGAGTGTGCAAAGGCGTTTGTCCAGACCTCCCATCTAGCAGTCCACGCTCGCGTGCACACTGGTGAACGACCCTATCAATGTCCACACTGCTCCATGTCATTTTCGCAGGACTCTGTGCTCCAGCGCCACATTAGGGTGCATACTGGCGAACGGCCTTTCAGCTGTCCCCATTGTCCGAAGACATTTGCCAGACACTCGGATGTCAAGgaacacatatgcatacatactgGTGAGCGACCATATAAGTGCCCGCAGTGCCCAAAAGCCTTTACCAAAAGCAGCAAGGTCAACAAGCATATTGCCATGCACACCAAGAAGGAGCGGAAACAAACAGAGATGCCTCCATCAGAAtag
Protein Sequence
MNTVIVKQELAEDDKVQIKLDTSLESIEVELVAANASPGTQNSDRRFKCAQCPQAFTENRLLKRHIRGHTGERSFKCPHCPKGFTDSSNRNHHIRTHSSDRPYKCPECSKSFIRNYFLQRHIRVHTGEKPYQCPHCSKTYSQGSQLAIHVRIHTGERPYQCAQCPMSFAYNSVLKQHIQRHTGKRPFSCPHCPKTFSRHASAKKHIRAHTEHKEMEKMDPKDQTETKEPPDEYELHTEIDVGCVKVELEDDSSTELNSTPNEGENSFKDEVQNTFSGEANTKEHMQELRVNKPKDDKSQATLMDNPKPKATANICSVCGRDFKHKSTLRVHMRTHTGEKPCQCPHCPKAFVCMSYLNNHIRTHSSDRRYKCPQCPKAFVVNSELKTHIRVHTGEKPYKCPECAKAFVQTSHLAVHARVHTGERPYQCPHCSMSFSQDSVLQRHIRVHTGERPFSCPHCPKTFARHSDVKEHICIHTGERPYKCPQCPKAFTKSSKVNKHIAMHTKKERKQTEMPPSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-