Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000243.1:1399769-1405662[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00043 0.035 15.0 0.5 1 23 145 167 145 167 0.98

2 14 8.2 6.8e+02 1.5 4.1 1 23 173 196 173 196 0.96

3 14 0.00023 0.019 15.9 1.2 1 23 394 416 394 416 0.98

4 14 0.5 41 5.4 0.3 1 23 475 498 475 498 0.93

5 14 0.0026 0.21 12.6 1.7 3 23 786 806 785 806 0.91

6 14 0.058 4.8 8.3 1.4 1 23 812 835 812 835 0.98

7 14 1.8 1.5e+02 3.6 4.1 2 23 872 893 871 894 0.93

8 14 0.00037 0.03 15.2 0.8 1 23 915 938 915 938 0.97

9 14 0.0061 0.5 11.4 0.6 1 23 1198 1221 1198 1221 0.92

10 14 0.00036 0.03 15.2 4.2 1 23 1234 1256 1234 1256 0.98

11 14 5.5e-05 0.0046 17.8 0.3 2 23 1262 1284 1261 1284 0.95

12 14 0.0027 0.22 12.5 4.8 2 23 1291 1315 1290 1315 0.90

13 14 0.052 4.3 8.5 0.2 1 23 1320 1342 1320 1342 0.96

14 14 0.099 8.2 7.6 1.0 1 23 1348 1371 1348 1371 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00043	0.035	15.0	0.5	1	23	145	167	145	167	0.98
2	14	8.2	6.8e+02	1.5	4.1	1	23	173	196	173	196	0.96
3	14	0.00023	0.019	15.9	1.2	1	23	394	416	394	416	0.98
4	14	0.5	41	5.4	0.3	1	23	475	498	475	498	0.93
5	14	0.0026	0.21	12.6	1.7	3	23	786	806	785	806	0.91
6	14	0.058	4.8	8.3	1.4	1	23	812	835	812	835	0.98
7	14	1.8	1.5e+02	3.6	4.1	2	23	872	893	871	894	0.93
8	14	0.00037	0.03	15.2	0.8	1	23	915	938	915	938	0.97
9	14	0.0061	0.5	11.4	0.6	1	23	1198	1221	1198	1221	0.92
10	14	0.00036	0.03	15.2	4.2	1	23	1234	1256	1234	1256	0.98
11	14	5.5e-05	0.0046	17.8	0.3	2	23	1262	1284	1261	1284	0.95
12	14	0.0027	0.22	12.5	4.8	2	23	1291	1315	1290	1315	0.90
13	14	0.052	4.3	8.5	0.2	1	23	1320	1342	1320	1342	0.96
14	14	0.099	8.2	7.6	1.0	1	23	1348	1371	1348	1371	0.96

Sequence Information

Coding Sequence: ATGGCGCACAAACGAATGAAAACAGAGGACATGGAAATCAATTACAAATTCGCATGTCGCTGTTGCCTCAAATCCGAGGCAGAATTCTTTAAGCTGGACTCATTAGCAGAGACTTTTATTGGCGACGCTAACGCGTCCAACGCAAAGTTACCCCTCATACGCTTGCTCTTGTTCTGCATGCGCACTGAAAATCTGCCCGAGCTGCCGCAATACATTTGCGTTGAATGCAGCAAGAGCTTGCAAATTGCTTACTGCTTCATACAAAACGGACTGCGGGCACACGAAATATTGTGTCGCAAGCTCTGCCCGGGAAAGCTAAAGTCCACAACCCGTTTAAATGGCCAACACCATCCGCAGCTGTTCGAGCCAACTTACCAAGATGACGCGACGCTAGACACGCAGATTGCGAAGCCCTGTAAGTCTGCGGTACGCCACGAATGCAAAGTATGCGGTGCCGTTATCTACAATCGCATGGAACTCAAGCAGCACATACGCATGCACGCAGaggcgACGAGGCATAAGTGCAAATTGTGTAACTTTATAACGGCTAAACATCGCCAGCTGCCGGAGCATTATCGCAGAGCGCATGGCTTGACCGCCGGCCAAATTGAGCAGCAGCTTCGAATAAGATCAATGCAggcggctgcagcagcaacaaatgcgacaacttcagcagcagctgctgaagCGGACGATGGTCAAGTTAAGGTGTGCACACTGGAGGATATGGAGTTGCTGATACCCACTGTGCTGACGCCTGAGGACTTTTCGCATCCCCAATTAGATGCAGATCAACTGCGTGCTATTGAACAACAATTGTCAAACTCTATTTGCGTTAATCCTTCCGGATCAGAGGCCGATTCCGTTGTCATACCATCTGAACCGACGATAGCTGCTGGCAACAATGTGAGCATAGGTGCCGAATTTCTCGTTATGCCCGATGGCACATTGCAGCAAGTAAATGACGCCGGAGTGGTTTTCGAATACATTGATGACAGCAAAAGCGCCAACACGACGGACAATATGAATTTACAAAGCCTGTTGGATGATTCAAAATCCGATTTGTCTTTTAATGCCATTGATATTGATATGTCAGCGATGGTTGCCGAGAATACGCTGCCACAGATAGCAGTGAGGCCAAAGCCCAGACCAGCACCTGCGTCTACTGCCGCCCTTAAACACAGATGCAAACTGTGCCCCAAAGCATTTCCCACGGTGGCACGCCTGAAATCTCATCAGTTAACGCACAGCCaTTTACCCAAATTTTATTGCGATCAGTGCGCCTTCTACACGCTGCGTAGCGCCGATCTTATCCAACATTACACATCAGAGCACAAGTCCATAGTTGGCGAAAGTAAAACGAATCTAATGGAAAAACAGCTAATGCCGCTGTCCCAGCCGGTGGTTGATATTAATCGCTCATTTTCCTGCGACATGTGTCTATTCGAGGCATCGAGCAGCGGTCAGTTGCGTGTACACTACAGCGAAAAGCATCTGATGCAGCCCAATGAGGTACAGCTGCGGCCCAGCTGGACCAATGAATCCACGTTGAAGGGCGACAGCTCATCGCGAACCAGTGGCGGTAACACAAATCAGCTGAAGGATCTAAAGTCAGCCACACCAGATATTCCGCTGGGTATTAAATATCCAACCATGACGTCTGCTGCAACGGCAGCTGACTCAATAGCGATTACAatggagcagcaacagccaccacaggcaacaacaacggcactGGTAACGCCAACTGGCGAGATTAATGTGGTCGTGGATGCCAGCTCATTGTTCTATGCAAGCGCTGCGCAGGGGATGCAGTCaaatgcagcaacaataacaacagcaataacaacagcaacaacaacagcaacagattcAAACACATTTGCAATATTTCCAGAGCATTCTTTTGCTAACAGCCTACCAACAACGACAATATCGGTGGAAACCAATGGAGtcctgcctgctgctgctgctactgcaaCTGTTGGCCCTGCTCCGGCAGAAAATGCAAGCATTAGCATCTTTGGAGATATGCAGGAATTCATTGATAACACCGATGTGGCAGCTATTTGCACAATACCAGCCGACGATATGCCCGTTGTCGATGGTGATGATATTGTtatagataataataatatgagcCTTGATTTTGATGCCGAAAATCTGTTTGAAGACTTTGAAGAGGATGCCGATGTGGGTGAagaagatgatgatgaggatgaggaggaCGTTGAAAATGATGATGAGAATGATAACAATGATGCGGCTGCCGATCAAAATTTATTGCTTACcagcgatgatgatgatgtggaTGACTTTGATGACGAACAATCGAAGCATTTACAAAAACCATATTGCATctattgtaataaaaagtttACCAGTCAGTACATGTTTGAAAACCACATGTTTCTCCACCGTGGACTGGCGCCCTATCGCTGTGAACTTTGCACCAACCTGTACAACATGAAGCGTCTGCTTATAAGACACTACAAGACGGTGCATAAGCGCATGCCCACAAGGGATATGGTTCAGGCCAAGGGCGACAAGGTATCCGTGCCGTGTACAGCCATCGAAACACTAAACATTAATGCCGACAAATCTCCTTTGCTGATGTGCGCTAAATGTCCCTTTGAATGCGAGCATGATGACAATATGCGCAAGCATCTGAATGCGCATCATGGCATCAACGATGGCGTATCTGTGCACGCCAACgaggtgtttattattcgcAaACTGCCCTTTGAGTGTCCACGCTGCGTTCGCTCATTTGCGGCCAAGCGCACGCTGACTCGCCATCTGCAACGGAGCCACTTGGTGGACACAATCATTGAGATGCAGGCGCCTCAATTGACAACTAGCTCAGCAGCCACCACAACCACATCAACAGCTACAACCACATTGCCGAACAATGCCAGTAGTGCCGATGGCGATGATAGCAATAAAACCACATCACAACACGAGTCTAACATGCTGGGAGCAACCTTGGAGCAGCGTGACGCTGGCACTGGCGATGGAAATTGTGAGAAGACGATTGTCAAGGCCACGGAAAATGCAGATATTGACATGAAACCCATAGTAACAACGCCAgaaacagctacaacaacaacggctaCGGGAACAGAAGTATTAATCGCATCAAAAATTGAAGCTACTGAAACAACAGAATCAACAAAAACAGTAGCAACAACTGCTGAAGGCATACCTGCAACAATCacaacagaagcagcaacaactacagaATCCCAAGCTGCAATTGCAACACCAACGGCAACACCACCAACAGCAACTGTCACACCACCAGCAGAAACTGCAacaccagcaccagcaacatCATCTCTAATAACCAcaccagcagctgcaacatcaGCAGAAGGCTCCACGCTCTTTCCAACGCCAACCCCATTTGACTTTGATCTTGATTTTATTGGCAATGGTGCGCATGGCACGCCCATTAAGAATAGCACTGATAGCTTTAACATTACACCGAGTGCTTGTCACCTTTTAAACGGCAGCGATAAGCTACTGACTGCTGCCTTGGAGCCATCGCCAATTAAAGATTTACGCGCACGCCTGCCCCGCACGCCAATATTTGTGTGCAAGCAGTGTAATCAGACCTTTGATGAGCTAAGCAAGTTGCTGCAGCACGAATTGGAGCAACATTCCAGCGGAACGATATCACCGCACAGCACTTATCAGCATCAGTGCAAAATTTGCAATACCACATACCGTACAGTGACGCTGCTTAATTATCACATGAAGCGTCATCCGACGCGAAAAATCGAGTGCACACTGTGCACCAAGCAGTTTACGACAAACTCGGATTTGGAGGAACATGTTCAGTCGGAGCATCGCAACCGGAAGCCTCTAAAGTGCGGTATGGATGGTTGCAAGAAGACTTTCAATTTCAAGCACCACCTTAAGCGCCATCAGACAGCCTCGCATACGCGTGTCCAGTATATATGTCCGGAGTGCGGAATTGATATGCTGACCAGTCAGCATCTGCGGAATCATATGGCAAGTCACAAGGGCACGCATTCCTACAGGTGCCCCAGATGCGTTCGCACCTATATGCGGCGCAATCCttTTCGTACGCATGCGCTGCGTGAGCACAAATGGGATCTGACTGATGCGGAAATTGAAAAGATATATTGTGTAAATGAGTCCAATAGTCCTCGACCTCAAACTAAAGGCAAGCCGGGGAGGGTTAGGAAAGAGCCGTCCTAA
Protein Sequence: MAHKRMKTEDMEINYKFACRCCLKSEAEFFKLDSLAETFIGDANASNAKLPLIRLLLFCMRTENLPELPQYICVECSKSLQIAYCFIQNGLRAHEILCRKLCPGKLKSTTRLNGQHHPQLFEPTYQDDATLDTQIAKPCKSAVRHECKVCGAVIYNRMELKQHIRMHAEATRHKCKLCNFITAKHRQLPEHYRRAHGLTAGQIEQQLRIRSMQAAAAATNATTSAAAAEADDGQVKVCTLEDMELLIPTVLTPEDFSHPQLDADQLRAIEQQLSNSICVNPSGSEADSVVIPSEPTIAAGNNVSIGAEFLVMPDGTLQQVNDAGVVFEYIDDSKSANTTDNMNLQSLLDDSKSDLSFNAIDIDMSAMVAENTLPQIAVRPKPRPAPASTAALKHRCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCAFYTLRSADLIQHYTSEHKSIVGESKTNLMEKQLMPLSQPVVDINRSFSCDMCLFEASSSGQLRVHYSEKHLMQPNEVQLRPSWTNESTLKGDSSSRTSGGNTNQLKDLKSATPDIPLGIKYPTMTSAATAADSIAITMEQQQPPQATTTALVTPTGEINVVVDASSLFYASAAQGMQSNAATITTAITTATTTATDSNTFAIFPEHSFANSLPTTTISVETNGVLPAAAATATVGPAPAENASISIFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNMSLDFDAENLFEDFEEDADVGEEDDDEDEEDVENDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYMFENHMFLHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVSVPCTAIETLNINADKSPLLMCAKCPFECEHDDNMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCVRSFAAKRTLTRHLQRSHLVDTIIEMQAPQLTTSSAATTTTSTATTTLPNNASSADGDDSNKTTSQHESNMLGATLEQRDAGTGDGNCEKTIVKATENADIDMKPIVTTPETATTTTATGTEVLIASKIEATETTESTKTVATTAEGIPATITTEAATTTESQAAIATPTATPPTATVTPPAETATPAPATSSLITTPAAATSAEGSTLFPTPTPFDFDLDFIGNGAHGTPIKNSTDSFNITPSACHLLNGSDKLLTAALEPSPIKDLRARLPRTPIFVCKQCNQTFDELSKLLQHELEQHSSGTISPHSTYQHQCKICNTTYRTVTLLNYHMKRHPTRKIECTLCTKQFTTNSDLEEHVQSEHRNRKPLKCGMDGCKKTFNFKHHLKRHQTASHTRVQYICPECGIDMLTSQHLRNHMASHKGTHSYRCPRCVRTYMRRNPFRTHALREHKWDLTDAEIEKIYCVNESNSPRPQTKGKPGRVRKEPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00805489;
90% Identity: -
80% Identity: -