Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000207.1:3322872-3325540[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.92 76 4.5 0.7 1 23 440 462 440 462 0.95

2 7 1.3e-05 0.0011 19.8 1.1 1 23 468 490 468 490 0.98

3 7 2.3e-06 0.00019 22.2 0.2 1 23 496 518 496 518 0.98

4 7 1.2e-06 0.0001 23.0 1.2 1 23 524 546 524 546 0.98

5 7 0.00037 0.03 15.2 1.8 1 23 552 574 552 574 0.97

6 7 4e-06 0.00033 21.4 2.4 3 23 582 602 580 602 0.94

7 7 3.8e-05 0.0031 18.3 0.6 1 23 608 631 608 631 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.92	76	4.5	0.7	1	23	440	462	440	462	0.95
2	7	1.3e-05	0.0011	19.8	1.1	1	23	468	490	468	490	0.98
3	7	2.3e-06	0.00019	22.2	0.2	1	23	496	518	496	518	0.98
4	7	1.2e-06	0.0001	23.0	1.2	1	23	524	546	524	546	0.98
5	7	0.00037	0.03	15.2	1.8	1	23	552	574	552	574	0.97
6	7	4e-06	0.00033	21.4	2.4	3	23	582	602	580	602	0.94
7	7	3.8e-05	0.0031	18.3	0.6	1	23	608	631	608	631	0.98

Sequence Information

Coding Sequence: ATGCAGCGCAAGTTGCGCGACGCGGAACAAGAGACGGCAAAAAGCACAGCAGAGTTGGAAGAAGatgagcaacagcaacaaaagcaattcgaattacaattacaattacaattggAGGCGAATGTACTGGAATTAACGCCCCCCGCAACGCCCCCAACACCCGTGCCGCCCACCTCGCCCACAAGCAGCGTTGCTAGCAGCGTTGACTTGAAGTTGCGCACACGTCGCGAACTCGAGCGCAATCGTGAGTTTGTCTGCTCCCTCCTCGTGGCCTATGAGCGCAACGAGAAACTGTGGAACCCCAAACATCCggactataaatataatgccAAGCGGAGCGTCTACGGCGAACTGGCTGCCCCACTTCAGGCCGTCTTCCAGATGCCCCTCACCGGCGCCGAAATCTTTGCCGTGCTCAAGGAGCTCCGTGGTCGCTACCGTCGCGAGCTCAGCAAACTGAACTCCTTGGGAGGCAAGTACAAGTCACGCCTGTGGTACTTTgagaaaatgcattttctaCGCGGCGCCATCGAGCACAAGAGGGCAGAGAGGGAGGCTAAGAGCGAGTCCACAGAAAGCGAGAAATCATGTGAAACGGACAATGAATCTACCACAAAGTCAGCACAATATCGTGAGGTGCTTAGTTGCATAATTGATGCGTTCAAACGGCAGGAGAGTCTGTGGAATCCTCAACACTTTGACTACAATAACTGTTGCAAAAAGGGACTGTACCGGAAGATCTCAGCGGAGCTGCTCGAGGAGCTCAACTACGAGATGAGTGGTGAGGAGTGCTTCAAGGAGATACAAAAGCTGCGCACACGCTATCGCAAGGAACTGCGCATGGTGATCAAACACAAGGGTCTCTATCTGCCCAAGCTCTGGTGCTACGATGAGCTGGAGTTTCTGCATAAGATACTGCAGGAGCAGATCTTCAACAAGATTAGCAAGAAAAAGGGCGTGGTGGAAACGAATCACAAGACAAAGTTTATCAATGCCAGCTGCATAAGCTTTGATACCCAGGATGATCAGCTACAGTTTGTGGAAATCTATCGCAACTATCCAGCATTATGGGATGTGGATCATCCCGACTTTCGCTCCAATGCCTATAGGAATCAGGCCTTGAGCCAAATGCTGGACGAGCTGAACACCACATTTCAATGCGCCTATACAACCGCCCAGCTGGAAAAGACGCTGTTTGAGCTACGCAAGGATTTCTCCGCACAGAAACGCAAAGTTCTTACCAATGCCGCAGGCTCCAGCAGCATACCGCTGCTGCACGCCAAGCTGGGACAGTTTCTGGAACAGAATCTGGGCCCCTTTCGTTGTGACGTCTGTGCGGAGCTGATAAAAACCTGTGATCAGTACAAGGTGCATCGCGCTGGCCACGATGGCACACAGCCATTTATATGCACACTCTGCGGCAAGGGCTTTCAAATGCCCTGTAATCTAACTGTGCACATACGCCGACATAGACGCGACTTCCCCTATGCCTGCGAGCAGTGCGACAAGCGTTTTGCAACCTCCACCGAGGTGGCCATACACATGCGCACCCATACCGGCGAGCGTCCCTATATCTGTGATCTGTGCGGCAAGTCGTTTAAGACGTGGTCGTTCTTTGACATTCATCGGCGCACGCATCTCAATCAGTCCACATTTCATTGCCCCATTTGCGATAAAGGGTTCTATGAAAAGAATCGCTTCACCGATCATATGAACGCCCATTTGAACATACGTAAGCATTTGTGCACCGTTTGTGGCAAAACCTTCACCACATATGGCAATCTCAAGAAGCACACTGAACTCCATCTGGCCGTGAAGAAGTACAAGTGTGCGGCTTGTGGCAAGCGTTTTGCTCAGTTTGCCAGTCTACGCTGGCACAGAAAGCGTGAGCACAGTTCTCATCAGGAggaggagcaacagcagcagcatgagGTGGAGGCTGAGGTGGAAGAACAGGAGGAGACGTAG
Protein Sequence: MQRKLRDAEQETAKSTAELEEDEQQQQKQFELQLQLQLEANVLELTPPATPPTPVPPTSPTSSVASSVDLKLRTRRELERNREFVCSLLVAYERNEKLWNPKHPDYKYNAKRSVYGELAAPLQAVFQMPLTGAEIFAVLKELRGRYRRELSKLNSLGGKYKSRLWYFEKMHFLRGAIEHKRAEREAKSESTESEKSCETDNESTTKSAQYREVLSCIIDAFKRQESLWNPQHFDYNNCCKKGLYRKISAELLEELNYEMSGEECFKEIQKLRTRYRKELRMVIKHKGLYLPKLWCYDELEFLHKILQEQIFNKISKKKGVVETNHKTKFINASCISFDTQDDQLQFVEIYRNYPALWDVDHPDFRSNAYRNQALSQMLDELNTTFQCAYTTAQLEKTLFELRKDFSAQKRKVLTNAAGSSSIPLLHAKLGQFLEQNLGPFRCDVCAELIKTCDQYKVHRAGHDGTQPFICTLCGKGFQMPCNLTVHIRRHRRDFPYACEQCDKRFATSTEVAIHMRTHTGERPYICDLCGKSFKTWSFFDIHRRTHLNQSTFHCPICDKGFYEKNRFTDHMNAHLNIRKHLCTVCGKTFTTYGNLKKHTELHLAVKKYKCAACGKRFAQFASLRWHRKREHSSHQEEEQQQQHEVEAEVEEQEET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00516449;
90% Identity: iTF_00541917;
80% Identity: -